Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Gm7514-201ENSMUST00000209475 934 ntBASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp49Q6P9L4 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp49Q6P9L4 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.72■□□□□ 0.91
Usp49Q6P9L4 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp49Q6P9L4 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.72■□□□□ 0.91
Usp49Q6P9L4 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.72■□□□□ 0.91
Usp49Q6P9L4 Gm18671-201ENSMUST00000214826 683 ntBASIC20.72■□□□□ 0.91
Usp49Q6P9L4 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC20.72■□□□□ 0.91
Usp49Q6P9L4 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Usp49Q6P9L4 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp49Q6P9L4 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Usp49Q6P9L4 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp49Q6P9L4 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Usp49Q6P9L4 Rarb-207ENSMUST00000225921 2756 ntBASIC20.71■□□□□ 0.91
Usp49Q6P9L4 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Usp49Q6P9L4 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp49Q6P9L4 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.71■□□□□ 0.91
Usp49Q6P9L4 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Usp49Q6P9L4 Gm37805-201ENSMUST00000192612 1094 ntBASIC20.71■□□□□ 0.91
Usp49Q6P9L4 AV356131-201ENSMUST00000206201 750 ntBASIC20.71■□□□□ 0.91
Usp49Q6P9L4 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp49Q6P9L4 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Usp49Q6P9L4 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp49Q6P9L4 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.71■□□□□ 0.91
Usp49Q6P9L4 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Usp49Q6P9L4 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
Usp49Q6P9L4 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp49Q6P9L4 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp49Q6P9L4 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.7■□□□□ 0.9
Usp49Q6P9L4 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp49Q6P9L4 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp49Q6P9L4 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Usp49Q6P9L4 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp49Q6P9L4 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Usp49Q6P9L4 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Usp49Q6P9L4 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.7■□□□□ 0.9
Usp49Q6P9L4 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp49Q6P9L4 Fst-202ENSMUST00000223640 2612 ntBASIC20.7■□□□□ 0.9
Usp49Q6P9L4 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Gm10849-201ENSMUST00000100397 618 ntBASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp49Q6P9L4 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp49Q6P9L4 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp49Q6P9L4 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp49Q6P9L4 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Usp49Q6P9L4 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp49Q6P9L4 AC164629.5-201ENSMUST00000220387 632 ntBASIC20.68■□□□□ 0.9
Usp49Q6P9L4 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Usp49Q6P9L4 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp49Q6P9L4 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp49Q6P9L4 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp49Q6P9L4 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp49Q6P9L4 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.67■□□□□ 0.9
Usp49Q6P9L4 AC107452.1-201ENSMUST00000227963 481 ntBASIC20.67■□□□□ 0.9
Usp49Q6P9L4 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp49Q6P9L4 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp49Q6P9L4 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
Usp49Q6P9L4 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp49Q6P9L4 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp49Q6P9L4 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Usp49Q6P9L4 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.65■□□□□ 0.9
Usp49Q6P9L4 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp49Q6P9L4 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.65■□□□□ 0.9
Usp49Q6P9L4 Gm43672-201ENSMUST00000199072 1731 ntBASIC20.65■□□□□ 0.9
Usp49Q6P9L4 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp49Q6P9L4 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms