Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cln3Q61124 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cln3Q61124 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC20.38■□□□□ 0.85
Cln3Q61124 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Cln3Q61124 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Cln3Q61124 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Cln3Q61124 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
Cln3Q61124 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Cln3Q61124 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC20.38■□□□□ 0.85
Cln3Q61124 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC20.38■□□□□ 0.85
Cln3Q61124 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cln3Q61124 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cln3Q61124 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cln3Q61124 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cln3Q61124 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Cln3Q61124 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC20.37■□□□□ 0.85
Cln3Q61124 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cln3Q61124 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC20.37■□□□□ 0.85
Cln3Q61124 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC20.37■□□□□ 0.85
Cln3Q61124 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Cln3Q61124 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cln3Q61124 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Cln3Q61124 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cln3Q61124 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cln3Q61124 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.36■□□□□ 0.85
Cln3Q61124 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cln3Q61124 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Cln3Q61124 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cln3Q61124 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cln3Q61124 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Cln3Q61124 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cln3Q61124 Gm42545-201ENSMUST00000202755 922 ntBASIC20.36■□□□□ 0.85
Cln3Q61124 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.36■□□□□ 0.85
Cln3Q61124 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cln3Q61124 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cln3Q61124 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Cln3Q61124 Gm45560-201ENSMUST00000211492 1472 ntBASIC20.36■□□□□ 0.85
Cln3Q61124 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cln3Q61124 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cln3Q61124 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cln3Q61124 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.35■□□□□ 0.85
Cln3Q61124 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC20.35■□□□□ 0.85
Cln3Q61124 Gm10138-203ENSMUST00000206952 366 ntBASIC20.35■□□□□ 0.85
Cln3Q61124 Gm18025-201ENSMUST00000221733 862 ntBASIC20.35■□□□□ 0.85
Cln3Q61124 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cln3Q61124 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cln3Q61124 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Cln3Q61124 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cln3Q61124 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cln3Q61124 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cln3Q61124 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cln3Q61124 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC20.34■□□□□ 0.85
Cln3Q61124 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cln3Q61124 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cln3Q61124 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cln3Q61124 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Cln3Q61124 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cln3Q61124 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cln3Q61124 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
Cln3Q61124 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cln3Q61124 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cln3Q61124 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
Cln3Q61124 Gm15375-201ENSMUST00000119510 849 ntBASIC20.33■□□□□ 0.85
Cln3Q61124 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
Cln3Q61124 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Cln3Q61124 Gm10231-201ENSMUST00000181584 441 ntBASIC20.33■□□□□ 0.85
Cln3Q61124 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cln3Q61124 Gm10175-202ENSMUST00000208752 441 ntBASIC20.33■□□□□ 0.85
Cln3Q61124 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cln3Q61124 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cln3Q61124 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cln3Q61124 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cln3Q61124 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Cln3Q61124 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Cln3Q61124 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Cln3Q61124 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Cln3Q61124 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cln3Q61124 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cln3Q61124 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cln3Q61124 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cln3Q61124 Gm6433-201ENSMUST00000118634 875 ntBASIC20.32■□□□□ 0.84
Cln3Q61124 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Cln3Q61124 Gm38285-201ENSMUST00000192928 922 ntBASIC20.32■□□□□ 0.84
Cln3Q61124 Gm21814-202ENSMUST00000203277 873 ntBASIC20.32■□□□□ 0.84
Cln3Q61124 Gm16042-201ENSMUST00000204813 1247 ntBASIC20.32■□□□□ 0.84
Cln3Q61124 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cln3Q61124 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC20.32■□□□□ 0.84
Cln3Q61124 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cln3Q61124 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cln3Q61124 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cln3Q61124 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Cln3Q61124 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cln3Q61124 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cln3Q61124 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cln3Q61124 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Cln3Q61124 Gm37292-201ENSMUST00000192062 758 ntBASIC20.31■□□□□ 0.84
Cln3Q61124 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cln3Q61124 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cln3Q61124 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cln3Q61124 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms