Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usf1Q61069 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usf1Q61069 Zfp783-201ENSMUST00000095946 670 ntBASIC16.84■□□□□ 0.29
Usf1Q61069 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC16.84■□□□□ 0.29
Usf1Q61069 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usf1Q61069 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usf1Q61069 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usf1Q61069 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Usf1Q61069 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC16.83■□□□□ 0.28
Usf1Q61069 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC16.83■□□□□ 0.28
Usf1Q61069 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Usf1Q61069 Gm13559-201ENSMUST00000120476 863 ntBASIC16.83■□□□□ 0.28
Usf1Q61069 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC16.83■□□□□ 0.28
Usf1Q61069 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usf1Q61069 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usf1Q61069 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC16.83■□□□□ 0.28
Usf1Q61069 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC16.83■□□□□ 0.28
Usf1Q61069 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usf1Q61069 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
Usf1Q61069 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usf1Q61069 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usf1Q61069 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Usf1Q61069 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usf1Q61069 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usf1Q61069 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usf1Q61069 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usf1Q61069 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Usf1Q61069 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Usf1Q61069 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC16.82■□□□□ 0.28
Usf1Q61069 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usf1Q61069 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usf1Q61069 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usf1Q61069 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usf1Q61069 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usf1Q61069 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usf1Q61069 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Usf1Q61069 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usf1Q61069 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Usf1Q61069 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Usf1Q61069 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC16.81■□□□□ 0.28
Usf1Q61069 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Usf1Q61069 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC16.81■□□□□ 0.28
Usf1Q61069 Gm11539-201ENSMUST00000119837 557 ntBASIC16.81■□□□□ 0.28
Usf1Q61069 Gm13436-201ENSMUST00000120418 567 ntBASIC16.81■□□□□ 0.28
Usf1Q61069 Gm6659-201ENSMUST00000174752 547 ntBASIC16.81■□□□□ 0.28
Usf1Q61069 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usf1Q61069 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC16.81■□□□□ 0.28
Usf1Q61069 Gm10459-201ENSMUST00000202708 1155 ntBASIC16.81■□□□□ 0.28
Usf1Q61069 Gm18025-201ENSMUST00000221733 862 ntBASIC16.81■□□□□ 0.28
Usf1Q61069 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Usf1Q61069 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usf1Q61069 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usf1Q61069 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Usf1Q61069 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Gm42545-201ENSMUST00000202755 922 ntBASIC16.8■□□□□ 0.28
Usf1Q61069 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usf1Q61069 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Usf1Q61069 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usf1Q61069 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usf1Q61069 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC16.79■□□□□ 0.28
Usf1Q61069 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usf1Q61069 Gm43006-201ENSMUST00000197702 1602 ntBASIC16.79■□□□□ 0.28
Usf1Q61069 Gm15375-201ENSMUST00000119510 849 ntBASIC16.79■□□□□ 0.28
Usf1Q61069 Gm7889-201ENSMUST00000185591 958 ntBASIC16.79■□□□□ 0.28
Usf1Q61069 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC16.79■□□□□ 0.28
Usf1Q61069 Odf3b-204ENSMUST00000227834 930 ntBASIC16.79■□□□□ 0.28
Usf1Q61069 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usf1Q61069 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usf1Q61069 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC16.79■□□□□ 0.28
Usf1Q61069 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usf1Q61069 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usf1Q61069 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usf1Q61069 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usf1Q61069 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usf1Q61069 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Usf1Q61069 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usf1Q61069 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Usf1Q61069 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC16.78■□□□□ 0.28
Usf1Q61069 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Usf1Q61069 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usf1Q61069 Timm23-208ENSMUST00000226683 750 ntBASIC16.78■□□□□ 0.28
Usf1Q61069 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usf1Q61069 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Usf1Q61069 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usf1Q61069 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usf1Q61069 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Usf1Q61069 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Usf1Q61069 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms