Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3aQ3ULJ3 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Upf3aQ3ULJ3 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3aQ3ULJ3 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 Gm11643-201ENSMUST00000119578 864 ntBASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3aQ3ULJ3 Gm34220-201ENSMUST00000223001 2709 ntBASIC19.47■□□□□ 0.71
Upf3aQ3ULJ3 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3aQ3ULJ3 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3aQ3ULJ3 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Upf3aQ3ULJ3 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3aQ3ULJ3 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3aQ3ULJ3 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3aQ3ULJ3 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3aQ3ULJ3 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3aQ3ULJ3 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3aQ3ULJ3 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3aQ3ULJ3 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3aQ3ULJ3 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.46■□□□□ 0.71
Upf3aQ3ULJ3 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3aQ3ULJ3 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.46■□□□□ 0.71
Upf3aQ3ULJ3 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3aQ3ULJ3 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Upf3aQ3ULJ3 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
Upf3aQ3ULJ3 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3aQ3ULJ3 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
Upf3aQ3ULJ3 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3aQ3ULJ3 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
Upf3aQ3ULJ3 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3aQ3ULJ3 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3aQ3ULJ3 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3aQ3ULJ3 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Upf3aQ3ULJ3 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3aQ3ULJ3 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3aQ3ULJ3 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3aQ3ULJ3 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Gm10138-203ENSMUST00000206952 366 ntBASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Gm9987-201ENSMUST00000069768 567 ntBASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3aQ3ULJ3 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3aQ3ULJ3 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Gm43183-201ENSMUST00000200632 547 ntBASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 AC130671.1-201ENSMUST00000227384 1237 ntBASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3aQ3ULJ3 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms