Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx3-2P97503 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx3-2P97503 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx3-2P97503 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
Nkx3-2P97503 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Nkx3-2P97503 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx3-2P97503 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx3-2P97503 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.37■□□□□ 0.37
Nkx3-2P97503 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.37■□□□□ 0.37
Nkx3-2P97503 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx3-2P97503 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Nkx3-2P97503 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Nkx3-2P97503 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx3-2P97503 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Nkx3-2P97503 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Nkx3-2P97503 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Nkx3-2P97503 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx3-2P97503 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Nkx3-2P97503 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
Nkx3-2P97503 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx3-2P97503 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx3-2P97503 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.35■□□□□ 0.37
Nkx3-2P97503 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Nkx3-2P97503 Dapk1-207ENSMUST00000226059 5009 ntBASIC17.34■□□□□ 0.37
Nkx3-2P97503 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.34■□□□□ 0.37
Nkx3-2P97503 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Gm8520-201ENSMUST00000186517 868 ntBASIC17.34■□□□□ 0.37
Nkx3-2P97503 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Fam105a-203ENSMUST00000226170 3043 ntBASIC17.34■□□□□ 0.37
Nkx3-2P97503 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Nkx3-2P97503 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx3-2P97503 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.33■□□□□ 0.37
Nkx3-2P97503 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.33■□□□□ 0.37
Nkx3-2P97503 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.33■□□□□ 0.37
Nkx3-2P97503 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nkx3-2P97503 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Nkx3-2P97503 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Nkx3-2P97503 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.33■□□□□ 0.36
Nkx3-2P97503 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nkx3-2P97503 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nkx3-2P97503 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Nkx3-2P97503 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.33■□□□□ 0.36
Nkx3-2P97503 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC17.33■□□□□ 0.36
Nkx3-2P97503 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC17.33■□□□□ 0.36
Nkx3-2P97503 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Nkx3-2P97503 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.33■□□□□ 0.36
Nkx3-2P97503 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nkx3-2P97503 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Nkx3-2P97503 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC17.33■□□□□ 0.36
Nkx3-2P97503 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx3-2P97503 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx3-2P97503 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx3-2P97503 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nkx3-2P97503 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms