Protein–RNA interactions for Protein: P59114

Pcif1, Phosphorylated CTD-interacting factor 1, mousemouse

Predictions only

Length 706 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1P59114 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcif1P59114 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcif1P59114 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Pcif1P59114 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.73■□□□□ 0.91
Pcif1P59114 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.73■□□□□ 0.91
Pcif1P59114 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcif1P59114 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Pcif1P59114 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.73■□□□□ 0.91
Pcif1P59114 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Pcif1P59114 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcif1P59114 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcif1P59114 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Pcif1P59114 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.72■□□□□ 0.91
Pcif1P59114 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Pcif1P59114 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Pcif1P59114 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcif1P59114 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.72■□□□□ 0.91
Pcif1P59114 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcif1P59114 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcif1P59114 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcif1P59114 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcif1P59114 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Pcif1P59114 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Pcif1P59114 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Pcif1P59114 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.71■□□□□ 0.91
Pcif1P59114 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcif1P59114 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcif1P59114 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.71■□□□□ 0.91
Pcif1P59114 Gm5297-201ENSMUST00000198555 1171 ntBASIC20.71■□□□□ 0.91
Pcif1P59114 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.71■□□□□ 0.91
Pcif1P59114 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcif1P59114 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcif1P59114 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcif1P59114 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Pcif1P59114 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.71■□□□□ 0.91
Pcif1P59114 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Pcif1P59114 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcif1P59114 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcif1P59114 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.7■□□□□ 0.9
Pcif1P59114 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.7■□□□□ 0.9
Pcif1P59114 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcif1P59114 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Pcif1P59114 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.7■□□□□ 0.9
Pcif1P59114 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcif1P59114 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
Pcif1P59114 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcif1P59114 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcif1P59114 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcif1P59114 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcif1P59114 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcif1P59114 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Pcif1P59114 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcif1P59114 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcif1P59114 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Pcif1P59114 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Pcif1P59114 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcif1P59114 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcif1P59114 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.68■□□□□ 0.9
Pcif1P59114 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.68■□□□□ 0.9
Pcif1P59114 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcif1P59114 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcif1P59114 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcif1P59114 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Pcif1P59114 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcif1P59114 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcif1P59114 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.68■□□□□ 0.9
Pcif1P59114 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcif1P59114 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcif1P59114 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcif1P59114 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC20.67■□□□□ 0.9
Pcif1P59114 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Pcif1P59114 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Pcif1P59114 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.67■□□□□ 0.9
Pcif1P59114 Gm43231-201ENSMUST00000202960 2258 ntBASIC20.67■□□□□ 0.9
Pcif1P59114 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Pcif1P59114 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcif1P59114 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcif1P59114 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcif1P59114 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Pcif1P59114 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Pcif1P59114 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcif1P59114 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Pcif1P59114 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcif1P59114 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Pcif1P59114 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcif1P59114 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcif1P59114 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcif1P59114 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcif1P59114 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms