Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.93■□□□□ 0.62
Sox1P53783 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sox1P53783 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sox1P53783 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Sox1P53783 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Sox1P53783 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Sox1P53783 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sox1P53783 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Sox1P53783 Gm15375-201ENSMUST00000119510 849 ntBASIC18.92■□□□□ 0.62
Sox1P53783 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sox1P53783 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Sox1P53783 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sox1P53783 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Sox1P53783 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.92■□□□□ 0.62
Sox1P53783 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Sox1P53783 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC18.92■□□□□ 0.62
Sox1P53783 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Sox1P53783 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Sox1P53783 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.91■□□□□ 0.62
Sox1P53783 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sox1P53783 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Sox1P53783 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
Sox1P53783 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Sox1P53783 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sox1P53783 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.91■□□□□ 0.62
Sox1P53783 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Sox1P53783 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sox1P53783 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Sox1P53783 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sox1P53783 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Sox1P53783 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sox1P53783 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sox1P53783 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox1P53783 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC18.9■□□□□ 0.62
Sox1P53783 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox1P53783 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.9■□□□□ 0.62
Sox1P53783 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Sox1P53783 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Sox1P53783 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox1P53783 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox1P53783 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Sox1P53783 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC18.9■□□□□ 0.62
Sox1P53783 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC18.89■□□□□ 0.61
Sox1P53783 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Sox1P53783 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sox1P53783 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.89■□□□□ 0.61
Sox1P53783 Gm15043-201ENSMUST00000118843 1543 ntBASIC18.89■□□□□ 0.61
Sox1P53783 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sox1P53783 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sox1P53783 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sox1P53783 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sox1P53783 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC18.88■□□□□ 0.61
Sox1P53783 AC160393.1-201ENSMUST00000218378 1279 ntBASIC18.88■□□□□ 0.61
Sox1P53783 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Sox1P53783 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC18.88■□□□□ 0.61
Sox1P53783 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
Sox1P53783 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sox1P53783 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sox1P53783 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sox1P53783 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sox1P53783 Gm13042-201ENSMUST00000119244 1955 ntBASIC18.88■□□□□ 0.61
Sox1P53783 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sox1P53783 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sox1P53783 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Sox1P53783 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.87■□□□□ 0.61
Sox1P53783 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.87■□□□□ 0.61
Sox1P53783 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.87■□□□□ 0.61
Sox1P53783 Gm19094-201ENSMUST00000209791 1246 ntBASIC18.87■□□□□ 0.61
Sox1P53783 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC18.87■□□□□ 0.61
Sox1P53783 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sox1P53783 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Sox1P53783 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Sox1P53783 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sox1P53783 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sox1P53783 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sox1P53783 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.86■□□□□ 0.61
Sox1P53783 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC18.86■□□□□ 0.61
Sox1P53783 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC18.86■□□□□ 0.61
Sox1P53783 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sox1P53783 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Sox1P53783 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sox1P53783 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sox1P53783 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sox1P53783 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sox1P53783 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Sox1P53783 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sox1P53783 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Sox1P53783 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.85■□□□□ 0.61
Sox1P53783 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Sox1P53783 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC18.85■□□□□ 0.61
Sox1P53783 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sox1P53783 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sox1P53783 Gm24589-201ENSMUST00000116692 94 ntBASIC18.85■□□□□ 0.61
Sox1P53783 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Sox1P53783 Gm27463-201ENSMUST00000183569 57 ntBASIC18.85■□□□□ 0.61
Sox1P53783 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.85■□□□□ 0.61
Sox1P53783 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sox1P53783 Zfp783-201ENSMUST00000095946 670 ntBASIC18.85■□□□□ 0.61
Sox1P53783 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sox1P53783 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms