Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Shmt1P50431 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Shmt1P50431 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Shmt1P50431 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Shmt1P50431 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Shmt1P50431 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Shmt1P50431 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shmt1P50431 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shmt1P50431 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shmt1P50431 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shmt1P50431 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shmt1P50431 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shmt1P50431 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Shmt1P50431 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Shmt1P50431 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Shmt1P50431 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shmt1P50431 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Shmt1P50431 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Shmt1P50431 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shmt1P50431 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shmt1P50431 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shmt1P50431 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Shmt1P50431 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shmt1P50431 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.56■□□□□ 0.72
Shmt1P50431 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Shmt1P50431 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.56■□□□□ 0.72
Shmt1P50431 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Shmt1P50431 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Shmt1P50431 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.56■□□□□ 0.72
Shmt1P50431 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Shmt1P50431 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Shmt1P50431 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Shmt1P50431 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
Shmt1P50431 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Shmt1P50431 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Shmt1P50431 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Shmt1P50431 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Shmt1P50431 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Shmt1P50431 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Shmt1P50431 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.55■□□□□ 0.72
Shmt1P50431 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Shmt1P50431 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Shmt1P50431 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Shmt1P50431 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Shmt1P50431 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Shmt1P50431 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC19.54■□□□□ 0.72
Shmt1P50431 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC19.54■□□□□ 0.72
Shmt1P50431 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Shmt1P50431 Gm20049-201ENSMUST00000219950 730 ntBASIC19.54■□□□□ 0.72
Shmt1P50431 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Shmt1P50431 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Shmt1P50431 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Shmt1P50431 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shmt1P50431 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.53■□□□□ 0.72
Shmt1P50431 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shmt1P50431 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shmt1P50431 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Shmt1P50431 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shmt1P50431 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC19.53■□□□□ 0.72
Shmt1P50431 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Shmt1P50431 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shmt1P50431 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Shmt1P50431 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shmt1P50431 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.53■□□□□ 0.72
Shmt1P50431 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.53■□□□□ 0.72
Shmt1P50431 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Shmt1P50431 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Shmt1P50431 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Shmt1P50431 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.52■□□□□ 0.72
Shmt1P50431 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19.52■□□□□ 0.72
Shmt1P50431 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Shmt1P50431 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Shmt1P50431 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Shmt1P50431 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Shmt1P50431 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Shmt1P50431 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Shmt1P50431 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.51■□□□□ 0.71
Shmt1P50431 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Shmt1P50431 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Shmt1P50431 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Shmt1P50431 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Shmt1P50431 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Shmt1P50431 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.5■□□□□ 0.71
Shmt1P50431 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Shmt1P50431 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Shmt1P50431 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Shmt1P50431 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Shmt1P50431 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Shmt1P50431 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Shmt1P50431 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Shmt1P50431 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Shmt1P50431 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Shmt1P50431 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Shmt1P50431 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Shmt1P50431 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Shmt1P50431 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Shmt1P50431 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Shmt1P50431 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Shmt1P50431 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.49■□□□□ 0.71
Shmt1P50431 Gm44549-201ENSMUST00000208351 577 ntBASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 89.3 ms