Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Msx1P13297 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Msx1P13297 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Msx1P13297 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Msx1P13297 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC17.46■□□□□ 0.39
Msx1P13297 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Msx1P13297 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.46■□□□□ 0.39
Msx1P13297 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC17.46■□□□□ 0.39
Msx1P13297 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Msx1P13297 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Msx1P13297 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Msx1P13297 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Msx1P13297 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Msx1P13297 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Msx1P13297 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.45■□□□□ 0.38
Msx1P13297 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Msx1P13297 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Msx1P13297 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Msx1P13297 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Msx1P13297 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Msx1P13297 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Msx1P13297 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Msx1P13297 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Msx1P13297 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Msx1P13297 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17.44■□□□□ 0.38
Msx1P13297 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 AC130671.1-201ENSMUST00000227384 1237 ntBASIC17.44■□□□□ 0.38
Msx1P13297 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Msx1P13297 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Msx1P13297 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Msx1P13297 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Msx1P13297 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Msx1P13297 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Msx1P13297 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Msx1P13297 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Msx1P13297 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Msx1P13297 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Msx1P13297 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Msx1P13297 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Msx1P13297 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Msx1P13297 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Msx1P13297 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Msx1P13297 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC17.42■□□□□ 0.38
Msx1P13297 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Msx1P13297 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Msx1P13297 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Msx1P13297 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Msx1P13297 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Msx1P13297 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Msx1P13297 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Msx1P13297 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Msx1P13297 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 BC021767-201ENSMUST00000126387 1716 ntBASIC17.41■□□□□ 0.38
Msx1P13297 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Msx1P13297 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Msx1P13297 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.41■□□□□ 0.38
Msx1P13297 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC17.41■□□□□ 0.38
Msx1P13297 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Msx1P13297 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.41■□□□□ 0.38
Msx1P13297 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms