Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RaraP11416 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
RaraP11416 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RaraP11416 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
RaraP11416 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC19.98■□□□□ 0.79
RaraP11416 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.98■□□□□ 0.79
RaraP11416 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
RaraP11416 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
RaraP11416 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RaraP11416 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.98■□□□□ 0.79
RaraP11416 Fst-202ENSMUST00000223640 2612 ntBASIC19.98■□□□□ 0.79
RaraP11416 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
RaraP11416 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RaraP11416 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
RaraP11416 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RaraP11416 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
RaraP11416 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
RaraP11416 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
RaraP11416 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.97■□□□□ 0.79
RaraP11416 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RaraP11416 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
RaraP11416 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RaraP11416 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
RaraP11416 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC19.96■□□□□ 0.79
RaraP11416 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
RaraP11416 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.96■□□□□ 0.79
RaraP11416 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC19.96■□□□□ 0.79
RaraP11416 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RaraP11416 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RaraP11416 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RaraP11416 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
RaraP11416 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RaraP11416 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
RaraP11416 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RaraP11416 Gm2011-201ENSMUST00000203124 1263 ntBASIC19.95■□□□□ 0.78
RaraP11416 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
RaraP11416 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.95■□□□□ 0.78
RaraP11416 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RaraP11416 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
RaraP11416 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
RaraP11416 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.95■□□□□ 0.78
RaraP11416 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RaraP11416 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RaraP11416 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19.94■□□□□ 0.78
RaraP11416 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RaraP11416 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
RaraP11416 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.94■□□□□ 0.78
RaraP11416 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
RaraP11416 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RaraP11416 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RaraP11416 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RaraP11416 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RaraP11416 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.94■□□□□ 0.78
RaraP11416 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
RaraP11416 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RaraP11416 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
RaraP11416 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.93■□□□□ 0.78
RaraP11416 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RaraP11416 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
RaraP11416 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RaraP11416 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RaraP11416 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RaraP11416 Gm13146-201ENSMUST00000118508 780 ntBASIC19.93■□□□□ 0.78
RaraP11416 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
RaraP11416 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC19.93■□□□□ 0.78
RaraP11416 Gm21168-201ENSMUST00000199646 1096 ntBASIC19.93■□□□□ 0.78
RaraP11416 Gm9988-201ENSMUST00000069786 435 ntBASIC19.93■□□□□ 0.78
RaraP11416 Reep4-203ENSMUST00000226563 1444 ntBASIC19.93■□□□□ 0.78
RaraP11416 Gm38308-201ENSMUST00000194934 1809 ntBASIC19.92■□□□□ 0.78
RaraP11416 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RaraP11416 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RaraP11416 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
RaraP11416 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RaraP11416 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
RaraP11416 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
RaraP11416 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RaraP11416 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC19.92■□□□□ 0.78
RaraP11416 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
RaraP11416 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
RaraP11416 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.92■□□□□ 0.78
RaraP11416 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RaraP11416 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RaraP11416 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RaraP11416 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.91■□□□□ 0.78
RaraP11416 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.91■□□□□ 0.78
RaraP11416 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RaraP11416 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RaraP11416 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RaraP11416 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
RaraP11416 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.9■□□□□ 0.78
RaraP11416 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RaraP11416 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RaraP11416 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RaraP11416 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RaraP11416 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
RaraP11416 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
RaraP11416 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
RaraP11416 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
RaraP11416 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.78
RaraP11416 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms