Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lire1P11260 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC17.39■□□□□ 0.37
Lire1P11260 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lire1P11260 CT025689.6-201ENSMUST00000224991 1104 ntBASIC17.39■□□□□ 0.37
Lire1P11260 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lire1P11260 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lire1P11260 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lire1P11260 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lire1P11260 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lire1P11260 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lire1P11260 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lire1P11260 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lire1P11260 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lire1P11260 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lire1P11260 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lire1P11260 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lire1P11260 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.38■□□□□ 0.37
Lire1P11260 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC17.38■□□□□ 0.37
Lire1P11260 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC17.38■□□□□ 0.37
Lire1P11260 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lire1P11260 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lire1P11260 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lire1P11260 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lire1P11260 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Lire1P11260 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lire1P11260 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Lire1P11260 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.38■□□□□ 0.37
Lire1P11260 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lire1P11260 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lire1P11260 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lire1P11260 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lire1P11260 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC17.37■□□□□ 0.37
Lire1P11260 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Lire1P11260 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Lire1P11260 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lire1P11260 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC17.37■□□□□ 0.37
Lire1P11260 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lire1P11260 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lire1P11260 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lire1P11260 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lire1P11260 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lire1P11260 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Lire1P11260 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
Lire1P11260 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lire1P11260 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
Lire1P11260 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lire1P11260 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Lire1P11260 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lire1P11260 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Lire1P11260 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC17.35■□□□□ 0.37
Lire1P11260 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Lire1P11260 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lire1P11260 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lire1P11260 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lire1P11260 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lire1P11260 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Lire1P11260 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
Lire1P11260 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC17.34■□□□□ 0.37
Lire1P11260 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.34■□□□□ 0.37
Lire1P11260 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC17.34■□□□□ 0.37
Lire1P11260 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC17.34■□□□□ 0.37
Lire1P11260 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lire1P11260 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Lire1P11260 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lire1P11260 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Lire1P11260 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Lire1P11260 Gm10602-201ENSMUST00000098239 609 ntBASIC17.34■□□□□ 0.37
Lire1P11260 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.34■□□□□ 0.37
Lire1P11260 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lire1P11260 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Lire1P11260 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lire1P11260 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lire1P11260 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lire1P11260 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lire1P11260 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lire1P11260 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lire1P11260 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lire1P11260 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC17.33■□□□□ 0.36
Lire1P11260 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC17.33■□□□□ 0.36
Lire1P11260 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lire1P11260 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lire1P11260 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lire1P11260 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lire1P11260 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Lire1P11260 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Lire1P11260 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms