Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a3E9PWQ3 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a3E9PWQ3 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Col6a3E9PWQ3 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a3E9PWQ3 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a3E9PWQ3 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a3E9PWQ3 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a3E9PWQ3 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Gm43347-201ENSMUST00000200226 580 ntBASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a3E9PWQ3 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a3E9PWQ3 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.67■□□□□ 0.58
Col6a3E9PWQ3 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC18.67■□□□□ 0.58
Col6a3E9PWQ3 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a3E9PWQ3 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a3E9PWQ3 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.67■□□□□ 0.58
Col6a3E9PWQ3 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
Col6a3E9PWQ3 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a3E9PWQ3 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a3E9PWQ3 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a3E9PWQ3 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a3E9PWQ3 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a3E9PWQ3 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC18.65■□□□□ 0.58
Col6a3E9PWQ3 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a3E9PWQ3 Gm43575-201ENSMUST00000196420 516 ntBASIC18.65■□□□□ 0.58
Col6a3E9PWQ3 Gm17808-201ENSMUST00000200859 894 ntBASIC18.65■□□□□ 0.58
Col6a3E9PWQ3 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Col6a3E9PWQ3 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a3E9PWQ3 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a3E9PWQ3 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC18.65■□□□□ 0.58
Col6a3E9PWQ3 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a3E9PWQ3 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Col6a3E9PWQ3 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC18.64■□□□□ 0.57
Col6a3E9PWQ3 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.64■□□□□ 0.57
Col6a3E9PWQ3 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Col6a3E9PWQ3 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a3E9PWQ3 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a3E9PWQ3 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC18.63■□□□□ 0.57
Col6a3E9PWQ3 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a3E9PWQ3 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a3E9PWQ3 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Col6a3E9PWQ3 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a3E9PWQ3 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.63■□□□□ 0.57
Col6a3E9PWQ3 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a3E9PWQ3 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.63■□□□□ 0.57
Col6a3E9PWQ3 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a3E9PWQ3 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Gm10138-203ENSMUST00000206952 366 ntBASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Gm27742-201ENSMUST00000184667 60 ntBASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Gm2651-201ENSMUST00000203560 838 ntBASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Gm21559-201ENSMUST00000220638 855 ntBASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a3E9PWQ3 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col6a3E9PWQ3 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col6a3E9PWQ3 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
Col6a3E9PWQ3 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col6a3E9PWQ3 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
Col6a3E9PWQ3 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Col6a3E9PWQ3 Gm27463-201ENSMUST00000183569 57 ntBASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms