Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav1A0A075B5Z4 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC17.19■□□□□ 0.34
Trav1A0A075B5Z4 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Trav1A0A075B5Z4 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trav1A0A075B5Z4 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav1A0A075B5Z4 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav1A0A075B5Z4 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav1A0A075B5Z4 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav1A0A075B5Z4 AC121961.1-201ENSMUST00000218594 1779 ntBASIC17.17■□□□□ 0.34
Trav1A0A075B5Z4 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav1A0A075B5Z4 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav1A0A075B5Z4 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav1A0A075B5Z4 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.17■□□□□ 0.34
Trav1A0A075B5Z4 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Trav1A0A075B5Z4 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.17■□□□□ 0.34
Trav1A0A075B5Z4 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav1A0A075B5Z4 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav1A0A075B5Z4 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trav1A0A075B5Z4 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav1A0A075B5Z4 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trav1A0A075B5Z4 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav1A0A075B5Z4 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trav1A0A075B5Z4 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trav1A0A075B5Z4 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav1A0A075B5Z4 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav1A0A075B5Z4 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav1A0A075B5Z4 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.15■□□□□ 0.34
Trav1A0A075B5Z4 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Gm10493-201ENSMUST00000097270 612 ntBASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Trav1A0A075B5Z4 Dmtn-207ENSMUST00000228001 2437 ntBASIC17.13■□□□□ 0.33
Trav1A0A075B5Z4 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Trav1A0A075B5Z4 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav1A0A075B5Z4 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Trav1A0A075B5Z4 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trav1A0A075B5Z4 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trav1A0A075B5Z4 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC17.13■□□□□ 0.33
Trav1A0A075B5Z4 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Trav1A0A075B5Z4 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Trav1A0A075B5Z4 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav1A0A075B5Z4 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Rarb-207ENSMUST00000225921 2756 ntBASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 AC160393.1-201ENSMUST00000218378 1279 ntBASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav1A0A075B5Z4 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms