Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 4933400A11Rik-202ENSMUST00000068894 1217 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Col18a1P39061 Prr9-201ENSMUST00000070284 1183 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Col18a1P39061 Trim40-201ENSMUST00000087158 2117 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.86
Col18a1P39061 Usp3-202ENSMUST00000098613 2797 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Col18a1P39061 Nos1-206ENSMUST00000142742 10123 ntAPPRIS P2 TSL 5 BASIC9.65□□□□□ -0.86
Col18a1P39061 Gm9030-201ENSMUST00000218405 2410 ntBASIC9.65□□□□□ -0.86
Col18a1P39061 Gm9029-201ENSMUST00000219232 2410 ntBASIC9.65□□□□□ -0.86
Col18a1P39061 Ocln-202ENSMUST00000069756 4052 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Col18a1P39061 Gm6313-202ENSMUST00000150112 2562 ntTSL 2 BASIC9.65□□□□□ -0.86
Col18a1P39061 Olfr97-201ENSMUST00000073667 1555 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.86
Col18a1P39061 Ccdc116-201ENSMUST00000023452 4210 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Col18a1P39061 Foxp2-205ENSMUST00000115474 2544 ntTSL 5 BASIC9.65□□□□□ -0.86
Col18a1P39061 Il16-201ENSMUST00000001792 5260 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
Col18a1P39061 Pcdhb8-201ENSMUST00000051163 3334 ntAPPRIS P1 BASIC9.65□□□□□ -0.86
Col18a1P39061 Sox2ot-215ENSMUST00000199171 3486 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Col18a1P39061 AC116476.1-201ENSMUST00000226274 2318 ntBASIC9.65□□□□□ -0.86
Col18a1P39061 Gm38339-201ENSMUST00000195479 1829 ntBASIC9.65□□□□□ -0.86
Col18a1P39061 Elp3-203ENSMUST00000225355 2771 ntAPPRIS P1 BASIC9.65□□□□□ -0.86
Col18a1P39061 D430018E03Rik-201ENSMUST00000181842 3832 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Col18a1P39061 Gm44062-201ENSMUST00000203312 4857 ntBASIC9.65□□□□□ -0.86
Col18a1P39061 6820431F20Rik-202ENSMUST00000153748 4659 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
Col18a1P39061 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC9.65□□□□□ -0.87
Col18a1P39061 Gm3676-201ENSMUST00000111869 899 ntAPPRIS P1 TSL 3 BASIC9.65□□□□□ -0.87
Col18a1P39061 Lage3-202ENSMUST00000114152 746 ntTSL 2 BASIC9.65□□□□□ -0.87
Col18a1P39061 Gm11533-201ENSMUST00000120287 477 ntBASIC9.65□□□□□ -0.87
Col18a1P39061 Gm7113-201ENSMUST00000120477 958 ntBASIC9.65□□□□□ -0.87
Col18a1P39061 Ston1-205ENSMUST00000150023 3231 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.87
Col18a1P39061 Gm25116-201ENSMUST00000157191 122 ntBASIC9.65□□□□□ -0.87
Col18a1P39061 Rfx3-204ENSMUST00000172907 2621 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
Col18a1P39061 1110008L16Rik-203ENSMUST00000183654 943 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
Col18a1P39061 Gm27460-201ENSMUST00000184213 100 ntBASIC9.65□□□□□ -0.87
Col18a1P39061 Gm28286-201ENSMUST00000188704 586 ntTSL 2 BASIC9.65□□□□□ -0.87
Col18a1P39061 Gm35108-201ENSMUST00000194321 699 ntBASIC9.65□□□□□ -0.87
Col18a1P39061 Gm33191-201ENSMUST00000195604 699 ntBASIC9.65□□□□□ -0.87
Col18a1P39061 Gm43222-201ENSMUST00000199013 603 ntBASIC9.65□□□□□ -0.87
Col18a1P39061 Gm7769-201ENSMUST00000212900 933 ntBASIC9.65□□□□□ -0.87
Col18a1P39061 Gm34424-201ENSMUST00000213400 782 ntBASIC9.65□□□□□ -0.87
Col18a1P39061 Tceal8-201ENSMUST00000060101 1250 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
Col18a1P39061 Gm23456-201ENSMUST00000083335 137 ntBASIC9.65□□□□□ -0.87
Col18a1P39061 Itgam-201ENSMUST00000064821 4682 ntAPPRIS ALT2 TSL 5 BASIC9.65□□□□□ -0.87
Col18a1P39061 Wdr17-202ENSMUST00000127511 4668 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Reep3-202ENSMUST00000217841 2925 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Olfr1555-ps1-202ENSMUST00000219261 2918 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Arhgef9-210ENSMUST00000182001 4622 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Ttll8-201ENSMUST00000109371 2968 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Hmg20a-201ENSMUST00000034879 3778 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 3425401B19Rik-201ENSMUST00000096038 5547 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Olfr605-202ENSMUST00000215417 2921 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm43430-201ENSMUST00000196513 3897 ntBASIC9.64□□□□□ -0.87
Col18a1P39061 Rsf1-201ENSMUST00000107153 11124 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Mup6-202ENSMUST00000107520 540 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm16157-202ENSMUST00000135564 1082 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm12963-203ENSMUST00000156271 388 ntTSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm16107-201ENSMUST00000162523 862 ntBASIC9.64□□□□□ -0.87
Col18a1P39061 Gm17066-202ENSMUST00000165350 1113 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 BC050972-202ENSMUST00000169153 467 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm20401-201ENSMUST00000173717 212 ntBASIC9.64□□□□□ -0.87
Col18a1P39061 9430065F17Rik-202ENSMUST00000180908 1084 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Olr1-203ENSMUST00000182784 570 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm28351-201ENSMUST00000186261 559 ntTSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm29587-201ENSMUST00000189898 332 ntTSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm37135-201ENSMUST00000192652 534 ntBASIC9.64□□□□□ -0.87
Col18a1P39061 Gm3511-201ENSMUST00000199823 204 ntBASIC9.64□□□□□ -0.87
Col18a1P39061 Zfp799-202ENSMUST00000201499 651 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm31861-201ENSMUST00000204563 672 ntBASIC9.64□□□□□ -0.87
Col18a1P39061 Gm6145-205ENSMUST00000211114 1148 ntTSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 AC124595.1-201ENSMUST00000221799 646 ntTSL 3 BASIC9.64□□□□□ -0.87
Col18a1P39061 AC164436.1-201ENSMUST00000227074 772 ntBASIC9.64□□□□□ -0.87
Col18a1P39061 BC028528-201ENSMUST00000036360 752 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Olfr267-201ENSMUST00000059608 944 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Col18a1P39061 Dnajb4-202ENSMUST00000050073 2464 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 B020014A21Rik-201ENSMUST00000217333 1938 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Sez6l-205ENSMUST00000212480 5857 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm43910-201ENSMUST00000204561 3241 ntBASIC9.64□□□□□ -0.87
Col18a1P39061 Sorbs1-202ENSMUST00000099467 2817 ntAPPRIS P4 TSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Zfp800-201ENSMUST00000035930 3881 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Smad9-201ENSMUST00000029371 5368 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Zfp930-204ENSMUST00000212681 3001 ntAPPRIS P1 TSL 2 BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm28322-201ENSMUST00000185627 1475 ntBASIC9.64□□□□□ -0.87
Col18a1P39061 Olfr770-204ENSMUST00000204712 1460 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm498-207ENSMUST00000207630 1483 ntTSL 5 BASIC9.64□□□□□ -0.87
Col18a1P39061 Slc5a6-205ENSMUST00000202520 3248 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Ogdhl-203ENSMUST00000228529 3723 ntAPPRIS ALT2 BASIC9.64□□□□□ -0.87
Col18a1P39061 Gm2447-202ENSMUST00000193813 1815 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Col18a1P39061 Ccnd2-201ENSMUST00000000188 6330 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Vmn1r59-201ENSMUST00000074132 1439 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
Col18a1P39061 Dysf-202ENSMUST00000089595 6613 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
Col18a1P39061 Arhgap17-204ENSMUST00000205262 3036 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Hspa12a-201ENSMUST00000066285 5733 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Cd93-201ENSMUST00000099269 6677 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Zmym3-203ENSMUST00000117901 5178 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm6977-201ENSMUST00000121568 512 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Fam229b-202ENSMUST00000124941 721 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm16346-201ENSMUST00000129158 937 ntTSL 5 BASIC9.63□□□□□ -0.87
Col18a1P39061 AI847159-203ENSMUST00000141786 915 ntTSL 2 BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm12279-201ENSMUST00000142533 294 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Rian-215ENSMUST00000183180 633 ntTSL 5 BASIC9.63□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 67.7 ms