Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 AC122769.1-201ENSMUST00000226930 1714 ntBASIC11.33□□□□□ -0.6
Cux1P53564 Olfr1441-203ENSMUST00000216506 2131 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cux1P53564 Gm29450-201ENSMUST00000189657 1497 ntTSL 5 BASIC11.33□□□□□ -0.6
Cux1P53564 Gm29278-202ENSMUST00000189701 1497 ntTSL 5 BASIC11.33□□□□□ -0.6
Cux1P53564 Espl1-201ENSMUST00000064924 6630 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cux1P53564 Garnl3-202ENSMUST00000102810 3578 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cux1P53564 Unc13d-202ENSMUST00000106450 4046 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Cux1P53564 Gm19325-201ENSMUST00000186238 3382 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cux1P53564 Ptprb-201ENSMUST00000092167 11911 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cux1P53564 Ift122-203ENSMUST00000112925 4122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cux1P53564 Fam47c-201ENSMUST00000105110 1639 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Cux1P53564 Gm20236-201ENSMUST00000193037 4540 ntBASIC11.33□□□□□ -0.6
Cux1P53564 Gm37094-201ENSMUST00000193352 4540 ntBASIC11.33□□□□□ -0.6
Cux1P53564 Gm14612-201ENSMUST00000121522 881 ntBASIC11.33□□□□□ -0.6
Cux1P53564 Gm12081-201ENSMUST00000152849 501 ntTSL 5 BASIC11.33□□□□□ -0.6
Cux1P53564 1110038B12Rik-201ENSMUST00000172501 579 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cux1P53564 Gm21304-201ENSMUST00000180568 1185 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
Cux1P53564 Gm21293-202ENSMUST00000180664 1185 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
Cux1P53564 Gm21312-203ENSMUST00000181239 1185 ntAPPRIS ALT2 TSL 3 BASIC11.33□□□□□ -0.6
Cux1P53564 Gm20765-203ENSMUST00000181707 1185 ntAPPRIS ALT2 TSL 3 BASIC11.33□□□□□ -0.6
Cux1P53564 Gm8609-201ENSMUST00000182967 998 ntBASIC11.33□□□□□ -0.6
Cux1P53564 Gm43964-201ENSMUST00000203570 301 ntTSL 3 BASIC11.33□□□□□ -0.6
Cux1P53564 Gm45391-201ENSMUST00000211563 576 ntTSL 5 BASIC11.33□□□□□ -0.6
Cux1P53564 Olfr882-ps1-201ENSMUST00000211842 450 ntBASIC11.33□□□□□ -0.6
Cux1P53564 CT485606.3-201ENSMUST00000215810 624 ntTSL 3 BASIC11.33□□□□□ -0.6
Cux1P53564 Gm34654-201ENSMUST00000217012 535 ntTSL 3 BASIC11.33□□□□□ -0.6
Cux1P53564 AC155709.1-201ENSMUST00000218794 162 ntBASIC11.33□□□□□ -0.6
Cux1P53564 AC156574.1-201ENSMUST00000227084 452 ntBASIC11.33□□□□□ -0.6
Cux1P53564 Apobec1-203ENSMUST00000112587 2072 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cux1P53564 Map4k4-215ENSMUST00000195259 3719 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cux1P53564 Zfp930-204ENSMUST00000212681 3001 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Cux1P53564 Sycp2l-201ENSMUST00000124093 2641 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cux1P53564 Olfr1276-203ENSMUST00000218065 5052 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cux1P53564 Olfr600-202ENSMUST00000215042 3527 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cux1P53564 Synj2-201ENSMUST00000061091 4072 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Chordc1-201ENSMUST00000001825 5789 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Trip11-201ENSMUST00000021605 9873 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Grik1-202ENSMUST00000072256 3655 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Sgsh-202ENSMUST00000100172 4223 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Nif3l1-201ENSMUST00000087521 3769 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Arhgef9-202ENSMUST00000113876 5342 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Olfr446-201ENSMUST00000101461 927 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Cux1P53564 Trappc1-204ENSMUST00000108662 635 ntTSL 2 BASIC11.32□□□□□ -0.6
Cux1P53564 Eloc-201ENSMUST00000115352 960 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Gm2200-201ENSMUST00000124814 764 ntTSL 3 BASIC11.32□□□□□ -0.6
Cux1P53564 Gm2117-201ENSMUST00000130478 764 ntTSL 3 BASIC11.32□□□□□ -0.6
Cux1P53564 Gm2101-202ENSMUST00000131997 764 ntTSL 3 BASIC11.32□□□□□ -0.6
Cux1P53564 Gm2165-203ENSMUST00000137981 764 ntTSL 3 BASIC11.32□□□□□ -0.6
Cux1P53564 Gm3669-204ENSMUST00000140946 764 ntTSL 3 BASIC11.32□□□□□ -0.6
Cux1P53564 Fabp12-204ENSMUST00000172126 779 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Gm4340-202ENSMUST00000181036 1197 ntAPPRIS ALT2 TSL 3 BASIC11.32□□□□□ -0.6
Cux1P53564 Gm35108-201ENSMUST00000194321 699 ntBASIC11.32□□□□□ -0.6
Cux1P53564 Gm33191-201ENSMUST00000195604 699 ntBASIC11.32□□□□□ -0.6
Cux1P53564 Gm43400-201ENSMUST00000197294 1254 ntTSL 5 BASIC11.32□□□□□ -0.6
Cux1P53564 Rps4x-ps-201ENSMUST00000199852 793 ntBASIC11.32□□□□□ -0.6
Cux1P53564 Olfr1284-202ENSMUST00000209096 1064 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Cux1P53564 5430437J10Rik-201ENSMUST00000211750 1234 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 AC154380.1-201ENSMUST00000226804 720 ntBASIC11.32□□□□□ -0.6
Cux1P53564 Olfr1129-201ENSMUST00000081034 945 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Cux1P53564 Ehbp1-207ENSMUST00000180360 4971 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
Cux1P53564 Zkscan5-201ENSMUST00000031601 3469 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 AU015836-202ENSMUST00000121565 2997 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Adar-202ENSMUST00000098924 5909 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Gm43684-201ENSMUST00000199279 6573 ntBASIC11.32□□□□□ -0.6
Cux1P53564 Gm15127-201ENSMUST00000101186 2026 ntAPPRIS P2 TSL 5 BASIC11.32□□□□□ -0.6
Cux1P53564 Gm15091-201ENSMUST00000112740 2026 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Cux1P53564 Gm15109-201ENSMUST00000133085 2026 ntBASIC11.32□□□□□ -0.6
Cux1P53564 Nrip1-202ENSMUST00000121927 7868 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cux1P53564 Gm5454-201ENSMUST00000052030 1453 ntBASIC11.32□□□□□ -0.6
Cux1P53564 Dock1-201ENSMUST00000084488 6807 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Cux1P53564 Peg13-201ENSMUST00000202826 4725 ntBASIC11.32□□□□□ -0.6
Cux1P53564 AC122426.2-201ENSMUST00000216522 2947 ntBASIC11.32□□□□□ -0.6
Cux1P53564 Mlip-211ENSMUST00000184415 1726 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Cux1P53564 Foxn3-201ENSMUST00000046859 7705 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cux1P53564 Map4k4-217ENSMUST00000195636 4082 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Cux1P53564 Slirp-204ENSMUST00000161023 2701 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cux1P53564 Gm22438-201ENSMUST00000104049 132 ntBASIC11.31□□□□□ -0.6
Cux1P53564 Gm16276-201ENSMUST00000131218 262 ntBASIC11.31□□□□□ -0.6
Cux1P53564 Gm17212-201ENSMUST00000166666 259 ntBASIC11.31□□□□□ -0.6
Cux1P53564 Gm43377-201ENSMUST00000201640 455 ntBASIC11.31□□□□□ -0.6
Cux1P53564 Scimp-201ENSMUST00000074572 617 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cux1P53564 Vmn1r219-201ENSMUST00000076180 939 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Cux1P53564 Gimap9-201ENSMUST00000054050 1384 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cux1P53564 Zfp663-202ENSMUST00000103085 3451 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cux1P53564 Fbxw20-201ENSMUST00000079548 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cux1P53564 Stag1-201ENSMUST00000041418 5909 ntTSL 5 BASIC11.31□□□□□ -0.6
Cux1P53564 Utrn-206ENSMUST00000219003 5751 ntTSL 5 BASIC11.31□□□□□ -0.6
Cux1P53564 Musk-208ENSMUST00000179951 3376 ntTSL 5 BASIC11.31□□□□□ -0.6
Cux1P53564 Gtdc1-201ENSMUST00000049051 2197 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cux1P53564 Herc3-202ENSMUST00000041401 4731 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cux1P53564 Ccdc39-201ENSMUST00000029222 3606 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cux1P53564 E130018O15Rik-201ENSMUST00000069741 3776 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cux1P53564 Gm14869-201ENSMUST00000119007 884 ntBASIC11.3□□□□□ -0.6
Cux1P53564 Prlr-204ENSMUST00000128450 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cux1P53564 Gm15859-201ENSMUST00000132069 710 ntTSL 5 BASIC11.3□□□□□ -0.6
Cux1P53564 Stau2-209ENSMUST00000145092 564 ntTSL 5 BASIC11.3□□□□□ -0.6
Cux1P53564 Gm10364-202ENSMUST00000153034 1001 ntBASIC11.3□□□□□ -0.6
Cux1P53564 Gm24286-201ENSMUST00000157632 128 ntBASIC11.3□□□□□ -0.6
Cux1P53564 Gm16343-201ENSMUST00000162027 410 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cux1P53564 Gm9672-201ENSMUST00000166437 425 ntBASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 57 ms