Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC22.2■■□□□ 1.14
Scn11aQ9R053 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Scn11aQ9R053 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Scn11aQ9R053 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Scn11aQ9R053 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Scn11aQ9R053 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC22.19■■□□□ 1.14
Scn11aQ9R053 Gm27741-201ENSMUST00000185060 237 ntBASIC22.19■■□□□ 1.14
Scn11aQ9R053 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC22.19■■□□□ 1.14
Scn11aQ9R053 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Scn11aQ9R053 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Scn11aQ9R053 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Scn11aQ9R053 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Scn11aQ9R053 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Scn11aQ9R053 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC22.18■■□□□ 1.14
Scn11aQ9R053 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Scn11aQ9R053 Gm9987-201ENSMUST00000069768 567 ntBASIC22.18■■□□□ 1.14
Scn11aQ9R053 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Scn11aQ9R053 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Scn11aQ9R053 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC22.18■■□□□ 1.14
Scn11aQ9R053 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Scn11aQ9R053 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Scn11aQ9R053 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Scn11aQ9R053 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC22.17■■□□□ 1.14
Scn11aQ9R053 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Scn11aQ9R053 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Scn11aQ9R053 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Scn11aQ9R053 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Scn11aQ9R053 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Scn11aQ9R053 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Scn11aQ9R053 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Scn11aQ9R053 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC22.16■■□□□ 1.14
Scn11aQ9R053 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Scn11aQ9R053 AC175538.1-201ENSMUST00000225343 1269 ntBASIC22.15■■□□□ 1.14
Scn11aQ9R053 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC22.15■■□□□ 1.14
Scn11aQ9R053 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
Scn11aQ9R053 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Scn11aQ9R053 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC22.15■■□□□ 1.14
Scn11aQ9R053 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Scn11aQ9R053 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Scn11aQ9R053 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Scn11aQ9R053 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Scn11aQ9R053 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Scn11aQ9R053 Mir1199-201ENSMUST00000117015 119 ntBASIC22.14■■□□□ 1.13
Scn11aQ9R053 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC22.14■■□□□ 1.13
Scn11aQ9R053 Flg-201ENSMUST00000050758 1488 ntBASIC22.14■■□□□ 1.13
Scn11aQ9R053 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC22.13■■□□□ 1.13
Scn11aQ9R053 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
Scn11aQ9R053 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
Scn11aQ9R053 Mir5122-201ENSMUST00000175004 89 ntBASIC22.13■■□□□ 1.13
Scn11aQ9R053 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
Scn11aQ9R053 Gm10459-201ENSMUST00000202708 1155 ntBASIC22.13■■□□□ 1.13
Scn11aQ9R053 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Scn11aQ9R053 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Scn11aQ9R053 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC22.13■■□□□ 1.13
Scn11aQ9R053 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Scn11aQ9R053 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Scn11aQ9R053 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Scn11aQ9R053 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Scn11aQ9R053 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC22.12■■□□□ 1.13
Scn11aQ9R053 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC22.12■■□□□ 1.13
Scn11aQ9R053 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC22.12■■□□□ 1.13
Scn11aQ9R053 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Scn11aQ9R053 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Scn11aQ9R053 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Scn11aQ9R053 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Scn11aQ9R053 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Scn11aQ9R053 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Scn11aQ9R053 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC22.12■■□□□ 1.13
Scn11aQ9R053 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC22.12■■□□□ 1.13
Scn11aQ9R053 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Scn11aQ9R053 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Scn11aQ9R053 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Scn11aQ9R053 Gm44544-201ENSMUST00000207052 1844 ntBASIC22.11■■□□□ 1.13
Scn11aQ9R053 CT010444.2-201ENSMUST00000217877 1629 ntBASIC22.11■■□□□ 1.13
Scn11aQ9R053 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
Scn11aQ9R053 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC22.11■■□□□ 1.13
Scn11aQ9R053 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Scn11aQ9R053 Mtag2-201ENSMUST00000058665 714 ntBASIC22.11■■□□□ 1.13
Scn11aQ9R053 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Scn11aQ9R053 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Scn11aQ9R053 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Scn11aQ9R053 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC22.11■■□□□ 1.13
Scn11aQ9R053 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Scn11aQ9R053 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC22.1■■□□□ 1.13
Scn11aQ9R053 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Scn11aQ9R053 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms