Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.61■□□□□ 0.89
Smc1aQ9CU62 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Mir5133-201ENSMUST00000174955 77 ntBASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.61■□□□□ 0.89
Smc1aQ9CU62 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Smc1aQ9CU62 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Smc1aQ9CU62 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Smc1aQ9CU62 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.59■□□□□ 0.89
Smc1aQ9CU62 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smc1aQ9CU62 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smc1aQ9CU62 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smc1aQ9CU62 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Smc1aQ9CU62 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.59■□□□□ 0.89
Smc1aQ9CU62 Gm12441-201ENSMUST00000121806 588 ntBASIC20.59■□□□□ 0.89
Smc1aQ9CU62 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.59■□□□□ 0.89
Smc1aQ9CU62 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Smc1aQ9CU62 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Smc1aQ9CU62 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Smc1aQ9CU62 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Smc1aQ9CU62 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Smc1aQ9CU62 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Smc1aQ9CU62 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Smc1aQ9CU62 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.58■□□□□ 0.89
Smc1aQ9CU62 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.58■□□□□ 0.89
Smc1aQ9CU62 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
Smc1aQ9CU62 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Smc1aQ9CU62 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
Smc1aQ9CU62 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Smc1aQ9CU62 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC20.56■□□□□ 0.88
Smc1aQ9CU62 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms