Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.67■□□□□ 0.74
Clp1Q99LI9 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Clp1Q99LI9 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Clp1Q99LI9 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Clp1Q99LI9 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Clp1Q99LI9 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Clp1Q99LI9 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Clp1Q99LI9 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Clp1Q99LI9 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Clp1Q99LI9 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Clp1Q99LI9 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Clp1Q99LI9 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Clp1Q99LI9 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Clp1Q99LI9 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.65■□□□□ 0.74
Clp1Q99LI9 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Clp1Q99LI9 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Clp1Q99LI9 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC19.65■□□□□ 0.74
Clp1Q99LI9 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC19.65■□□□□ 0.74
Clp1Q99LI9 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Clp1Q99LI9 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.65■□□□□ 0.74
Clp1Q99LI9 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Clp1Q99LI9 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Clp1Q99LI9 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Clp1Q99LI9 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Clp1Q99LI9 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Clp1Q99LI9 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Clp1Q99LI9 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Clp1Q99LI9 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Clp1Q99LI9 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Clp1Q99LI9 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Clp1Q99LI9 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Clp1Q99LI9 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Clp1Q99LI9 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Clp1Q99LI9 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Clp1Q99LI9 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Clp1Q99LI9 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Clp1Q99LI9 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Clp1Q99LI9 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.64■□□□□ 0.73
Clp1Q99LI9 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
Clp1Q99LI9 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Clp1Q99LI9 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Clp1Q99LI9 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Clp1Q99LI9 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Clp1Q99LI9 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Clp1Q99LI9 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19.63■□□□□ 0.73
Clp1Q99LI9 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Clp1Q99LI9 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Clp1Q99LI9 Gm16042-201ENSMUST00000204813 1247 ntBASIC19.63■□□□□ 0.73
Clp1Q99LI9 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.63■□□□□ 0.73
Clp1Q99LI9 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Clp1Q99LI9 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Clp1Q99LI9 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Clp1Q99LI9 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Clp1Q99LI9 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Clp1Q99LI9 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19.62■□□□□ 0.73
Clp1Q99LI9 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.62■□□□□ 0.73
Clp1Q99LI9 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC19.62■□□□□ 0.73
Clp1Q99LI9 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.62■□□□□ 0.73
Clp1Q99LI9 Gm30025-201ENSMUST00000218555 728 ntBASIC19.62■□□□□ 0.73
Clp1Q99LI9 Gm18025-201ENSMUST00000221733 862 ntBASIC19.62■□□□□ 0.73
Clp1Q99LI9 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Clp1Q99LI9 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Clp1Q99LI9 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Clp1Q99LI9 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Clp1Q99LI9 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.61■□□□□ 0.73
Clp1Q99LI9 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Clp1Q99LI9 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Clp1Q99LI9 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Clp1Q99LI9 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Clp1Q99LI9 Gm15375-201ENSMUST00000119510 849 ntBASIC19.6■□□□□ 0.73
Clp1Q99LI9 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Clp1Q99LI9 Odf3b-204ENSMUST00000227834 930 ntBASIC19.6■□□□□ 0.73
Clp1Q99LI9 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Clp1Q99LI9 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC19.6■□□□□ 0.73
Clp1Q99LI9 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Clp1Q99LI9 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Clp1Q99LI9 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Clp1Q99LI9 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Clp1Q99LI9 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Clp1Q99LI9 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Clp1Q99LI9 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Clp1Q99LI9 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Clp1Q99LI9 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC19.59■□□□□ 0.73
Clp1Q99LI9 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.59■□□□□ 0.73
Clp1Q99LI9 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms