Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
Ushbp1Q8R370 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ushbp1Q8R370 Gm22240-201ENSMUST00000175225 82 ntBASIC20.78■□□□□ 0.92
Ushbp1Q8R370 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ushbp1Q8R370 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Ushbp1Q8R370 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ushbp1Q8R370 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.78■□□□□ 0.92
Ushbp1Q8R370 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ushbp1Q8R370 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ushbp1Q8R370 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Ushbp1Q8R370 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ushbp1Q8R370 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.77■□□□□ 0.92
Ushbp1Q8R370 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ushbp1Q8R370 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
Ushbp1Q8R370 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ushbp1Q8R370 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ushbp1Q8R370 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ushbp1Q8R370 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ushbp1Q8R370 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Ushbp1Q8R370 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ushbp1Q8R370 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ushbp1Q8R370 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.76■□□□□ 0.91
Ushbp1Q8R370 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.76■□□□□ 0.91
Ushbp1Q8R370 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ushbp1Q8R370 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ushbp1Q8R370 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ushbp1Q8R370 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ushbp1Q8R370 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.75■□□□□ 0.91
Ushbp1Q8R370 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ushbp1Q8R370 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ushbp1Q8R370 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Gm20760-201ENSMUST00000179197 648 ntBASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ushbp1Q8R370 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ushbp1Q8R370 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ushbp1Q8R370 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ushbp1Q8R370 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.73■□□□□ 0.91
Ushbp1Q8R370 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.73■□□□□ 0.91
Ushbp1Q8R370 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ushbp1Q8R370 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ushbp1Q8R370 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ushbp1Q8R370 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ushbp1Q8R370 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ushbp1Q8R370 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Gm12527-201ENSMUST00000117967 564 ntBASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ushbp1Q8R370 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ushbp1Q8R370 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ushbp1Q8R370 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ushbp1Q8R370 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ushbp1Q8R370 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Ushbp1Q8R370 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.71■□□□□ 0.91
Ushbp1Q8R370 Gm10252-201ENSMUST00000209541 832 ntBASIC20.71■□□□□ 0.91
Ushbp1Q8R370 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.71■□□□□ 0.91
Ushbp1Q8R370 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ushbp1Q8R370 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Ushbp1Q8R370 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ushbp1Q8R370 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ushbp1Q8R370 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ushbp1Q8R370 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ushbp1Q8R370 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ushbp1Q8R370 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Ushbp1Q8R370 Gm13146-201ENSMUST00000118508 780 ntBASIC20.7■□□□□ 0.9
Ushbp1Q8R370 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ushbp1Q8R370 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Ushbp1Q8R370 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Ushbp1Q8R370 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Ushbp1Q8R370 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ushbp1Q8R370 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ushbp1Q8R370 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.69■□□□□ 0.9
Ushbp1Q8R370 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.69■□□□□ 0.9
Ushbp1Q8R370 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.69■□□□□ 0.9
Ushbp1Q8R370 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms