Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
Brf1Q8CFK2 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC22.41■■□□□ 1.18
Brf1Q8CFK2 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Brf1Q8CFK2 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Brf1Q8CFK2 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC22.41■■□□□ 1.18
Brf1Q8CFK2 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC22.41■■□□□ 1.18
Brf1Q8CFK2 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Brf1Q8CFK2 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
Brf1Q8CFK2 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Brf1Q8CFK2 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Brf1Q8CFK2 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Brf1Q8CFK2 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Brf1Q8CFK2 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Brf1Q8CFK2 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Brf1Q8CFK2 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Brf1Q8CFK2 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC22.4■■□□□ 1.18
Brf1Q8CFK2 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
Brf1Q8CFK2 AC164629.5-201ENSMUST00000220387 632 ntBASIC22.4■■□□□ 1.18
Brf1Q8CFK2 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Brf1Q8CFK2 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Brf1Q8CFK2 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.18
Brf1Q8CFK2 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC22.39■■□□□ 1.17
Brf1Q8CFK2 Gm37179-201ENSMUST00000194862 823 ntBASIC22.39■■□□□ 1.17
Brf1Q8CFK2 Gm42555-201ENSMUST00000199304 1039 ntBASIC22.39■■□□□ 1.17
Brf1Q8CFK2 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC22.39■■□□□ 1.17
Brf1Q8CFK2 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC22.39■■□□□ 1.17
Brf1Q8CFK2 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Brf1Q8CFK2 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Brf1Q8CFK2 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Brf1Q8CFK2 Gm5112-201ENSMUST00000204407 2368 ntBASIC22.39■■□□□ 1.17
Brf1Q8CFK2 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Brf1Q8CFK2 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Brf1Q8CFK2 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Brf1Q8CFK2 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Brf1Q8CFK2 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
Brf1Q8CFK2 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Brf1Q8CFK2 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Brf1Q8CFK2 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Brf1Q8CFK2 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC22.38■■□□□ 1.17
Brf1Q8CFK2 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Brf1Q8CFK2 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Brf1Q8CFK2 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Brf1Q8CFK2 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC22.37■■□□□ 1.17
Brf1Q8CFK2 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC22.37■■□□□ 1.17
Brf1Q8CFK2 Gm6365-201ENSMUST00000054711 744 ntBASIC22.37■■□□□ 1.17
Brf1Q8CFK2 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Brf1Q8CFK2 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
Brf1Q8CFK2 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Brf1Q8CFK2 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Brf1Q8CFK2 Gm7856-201ENSMUST00000117514 1493 ntBASIC22.36■■□□□ 1.17
Brf1Q8CFK2 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC22.36■■□□□ 1.17
Brf1Q8CFK2 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Brf1Q8CFK2 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Brf1Q8CFK2 Slc35b2-207ENSMUST00000226086 850 ntBASIC22.36■■□□□ 1.17
Brf1Q8CFK2 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Brf1Q8CFK2 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
Brf1Q8CFK2 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Brf1Q8CFK2 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Gm43672-201ENSMUST00000199072 1731 ntBASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Gm8309-201ENSMUST00000206627 1448 ntBASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Brf1Q8CFK2 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Brf1Q8CFK2 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Brf1Q8CFK2 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC22.33■■□□□ 1.17
Brf1Q8CFK2 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC22.33■■□□□ 1.17
Brf1Q8CFK2 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Brf1Q8CFK2 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC22.33■■□□□ 1.17
Brf1Q8CFK2 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC22.33■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms