Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 Dmtn-207ENSMUST00000228001 2437 ntBASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Ccdc28aQ8CEI3 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.55■□□□□ 0.72
Ccdc28aQ8CEI3 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28aQ8CEI3 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28aQ8CEI3 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Ccdc28aQ8CEI3 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28aQ8CEI3 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28aQ8CEI3 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28aQ8CEI3 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28aQ8CEI3 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28aQ8CEI3 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc28aQ8CEI3 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Smad6-203ENSMUST00000179458 273 ntBASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Gm27801-201ENSMUST00000184174 223 ntBASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc28aQ8CEI3 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 CT030146.1-201ENSMUST00000220919 217 ntBASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc28aQ8CEI3 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28aQ8CEI3 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28aQ8CEI3 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28aQ8CEI3 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28aQ8CEI3 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc28aQ8CEI3 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Ccdc28aQ8CEI3 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Ccdc28aQ8CEI3 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Ccdc28aQ8CEI3 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc28aQ8CEI3 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ccdc28aQ8CEI3 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ccdc28aQ8CEI3 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms