Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim9Q8C7M3 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Trim9Q8C7M3 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.49■□□□□ 0.87
Trim9Q8C7M3 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim9Q8C7M3 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
Trim9Q8C7M3 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim9Q8C7M3 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim9Q8C7M3 Gm26571-201ENSMUST00000181399 666 ntBASIC20.48■□□□□ 0.87
Trim9Q8C7M3 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim9Q8C7M3 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim9Q8C7M3 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim9Q8C7M3 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim9Q8C7M3 Gm37805-201ENSMUST00000192612 1094 ntBASIC20.47■□□□□ 0.87
Trim9Q8C7M3 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim9Q8C7M3 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim9Q8C7M3 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim9Q8C7M3 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim9Q8C7M3 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim9Q8C7M3 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim9Q8C7M3 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim9Q8C7M3 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim9Q8C7M3 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim9Q8C7M3 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim9Q8C7M3 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim9Q8C7M3 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim9Q8C7M3 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trim9Q8C7M3 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
Trim9Q8C7M3 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim9Q8C7M3 Gm8495-201ENSMUST00000188740 694 ntBASIC20.45■□□□□ 0.86
Trim9Q8C7M3 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Trim9Q8C7M3 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim9Q8C7M3 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim9Q8C7M3 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim9Q8C7M3 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim9Q8C7M3 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim9Q8C7M3 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 AC107452.1-201ENSMUST00000227963 481 ntBASIC20.43■□□□□ 0.86
Trim9Q8C7M3 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim9Q8C7M3 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim9Q8C7M3 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Trim9Q8C7M3 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim9Q8C7M3 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim9Q8C7M3 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.42■□□□□ 0.86
Trim9Q8C7M3 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim9Q8C7M3 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim9Q8C7M3 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.42■□□□□ 0.86
Trim9Q8C7M3 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim9Q8C7M3 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim9Q8C7M3 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim9Q8C7M3 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms