Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 BC021767-201ENSMUST00000126387 1716 ntBASIC20.58■□□□□ 0.89
Trim47Q8C0E3 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim47Q8C0E3 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC20.58■□□□□ 0.89
Trim47Q8C0E3 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim47Q8C0E3 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim47Q8C0E3 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.58■□□□□ 0.89
Trim47Q8C0E3 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim47Q8C0E3 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim47Q8C0E3 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.58■□□□□ 0.89
Trim47Q8C0E3 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Trim47Q8C0E3 AC160393.1-201ENSMUST00000218378 1279 ntBASIC20.58■□□□□ 0.89
Trim47Q8C0E3 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim47Q8C0E3 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim47Q8C0E3 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim47Q8C0E3 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim47Q8C0E3 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim47Q8C0E3 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim47Q8C0E3 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim47Q8C0E3 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim47Q8C0E3 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.55■□□□□ 0.88
Trim47Q8C0E3 Gm20049-201ENSMUST00000219950 730 ntBASIC20.55■□□□□ 0.88
Trim47Q8C0E3 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim47Q8C0E3 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Trim47Q8C0E3 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim47Q8C0E3 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim47Q8C0E3 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim47Q8C0E3 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.55■□□□□ 0.88
Trim47Q8C0E3 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.54■□□□□ 0.88
Trim47Q8C0E3 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim47Q8C0E3 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.54■□□□□ 0.88
Trim47Q8C0E3 Gm10653-202ENSMUST00000139570 835 ntBASIC20.54■□□□□ 0.88
Trim47Q8C0E3 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim47Q8C0E3 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim47Q8C0E3 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim47Q8C0E3 AC112142.1-201ENSMUST00000228796 918 ntBASIC20.54■□□□□ 0.88
Trim47Q8C0E3 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim47Q8C0E3 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trim47Q8C0E3 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim47Q8C0E3 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim47Q8C0E3 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim47Q8C0E3 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.53■□□□□ 0.88
Trim47Q8C0E3 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim47Q8C0E3 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim47Q8C0E3 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim47Q8C0E3 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim47Q8C0E3 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim47Q8C0E3 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim47Q8C0E3 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim47Q8C0E3 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim47Q8C0E3 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20.52■□□□□ 0.88
Trim47Q8C0E3 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim47Q8C0E3 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Trim47Q8C0E3 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Trim47Q8C0E3 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Trim47Q8C0E3 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim47Q8C0E3 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms