Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC21.96■■□□□ 1.11
Trim56Q80VI1 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC21.96■■□□□ 1.11
Trim56Q80VI1 Gm3807-201ENSMUST00000193520 1168 ntBASIC21.96■■□□□ 1.11
Trim56Q80VI1 AC160393.1-201ENSMUST00000218378 1279 ntBASIC21.96■■□□□ 1.11
Trim56Q80VI1 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Trim56Q80VI1 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trim56Q80VI1 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trim56Q80VI1 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trim56Q80VI1 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trim56Q80VI1 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Trim56Q80VI1 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trim56Q80VI1 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trim56Q80VI1 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC21.95■■□□□ 1.1
Trim56Q80VI1 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trim56Q80VI1 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trim56Q80VI1 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
Trim56Q80VI1 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Trim56Q80VI1 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
Trim56Q80VI1 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC21.94■■□□□ 1.1
Trim56Q80VI1 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Trim56Q80VI1 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Trim56Q80VI1 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC21.94■■□□□ 1.1
Trim56Q80VI1 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Trim56Q80VI1 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Trim56Q80VI1 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Trim56Q80VI1 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trim56Q80VI1 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Trim56Q80VI1 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC21.93■■□□□ 1.1
Trim56Q80VI1 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trim56Q80VI1 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC21.93■■□□□ 1.1
Trim56Q80VI1 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim56Q80VI1 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim56Q80VI1 Gm12441-201ENSMUST00000121806 588 ntBASIC21.92■■□□□ 1.1
Trim56Q80VI1 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim56Q80VI1 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim56Q80VI1 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC21.92■■□□□ 1.1
Trim56Q80VI1 Rab3c-203ENSMUST00000224180 967 ntBASIC21.92■■□□□ 1.1
Trim56Q80VI1 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim56Q80VI1 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim56Q80VI1 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim56Q80VI1 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim56Q80VI1 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim56Q80VI1 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim56Q80VI1 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim56Q80VI1 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim56Q80VI1 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim56Q80VI1 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim56Q80VI1 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC21.91■■□□□ 1.1
Trim56Q80VI1 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC21.91■■□□□ 1.1
Trim56Q80VI1 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim56Q80VI1 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim56Q80VI1 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Trim56Q80VI1 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC21.91■■□□□ 1.1
Trim56Q80VI1 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Trim56Q80VI1 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Trim56Q80VI1 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trim56Q80VI1 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Trim56Q80VI1 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC21.9■■□□□ 1.1
Trim56Q80VI1 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC21.9■■□□□ 1.1
Trim56Q80VI1 Gm44672-201ENSMUST00000206944 1098 ntBASIC21.9■■□□□ 1.1
Trim56Q80VI1 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trim56Q80VI1 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Trim56Q80VI1 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Trim56Q80VI1 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Trim56Q80VI1 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
Trim56Q80VI1 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
Trim56Q80VI1 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trim56Q80VI1 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.89■■□□□ 1.09
Trim56Q80VI1 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Trim56Q80VI1 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC21.88■■□□□ 1.09
Trim56Q80VI1 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Gm12527-201ENSMUST00000117967 564 ntBASIC21.88■■□□□ 1.09
Trim56Q80VI1 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Gm37805-201ENSMUST00000192612 1094 ntBASIC21.88■■□□□ 1.09
Trim56Q80VI1 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim56Q80VI1 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim56Q80VI1 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms