Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb4Q6P8W9 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb4Q6P8W9 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.34■□□□□ 0.69
Hmgb4Q6P8W9 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb4Q6P8W9 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb4Q6P8W9 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Hmgb4Q6P8W9 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb4Q6P8W9 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb4Q6P8W9 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb4Q6P8W9 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb4Q6P8W9 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb4Q6P8W9 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hmgb4Q6P8W9 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Hmgb4Q6P8W9 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hmgb4Q6P8W9 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hmgb4Q6P8W9 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Hmgb4Q6P8W9 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.33■□□□□ 0.69
Hmgb4Q6P8W9 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hmgb4Q6P8W9 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hmgb4Q6P8W9 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb4Q6P8W9 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb4Q6P8W9 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb4Q6P8W9 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.33■□□□□ 0.68
Hmgb4Q6P8W9 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb4Q6P8W9 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Hmgb4Q6P8W9 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb4Q6P8W9 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb4Q6P8W9 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb4Q6P8W9 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb4Q6P8W9 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb4Q6P8W9 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Gm10252-201ENSMUST00000209541 832 ntBASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb4Q6P8W9 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb4Q6P8W9 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb4Q6P8W9 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb4Q6P8W9 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb4Q6P8W9 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC19.3■□□□□ 0.68
Hmgb4Q6P8W9 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC19.3■□□□□ 0.68
Hmgb4Q6P8W9 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb4Q6P8W9 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Hmgb4Q6P8W9 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Hmgb4Q6P8W9 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb4Q6P8W9 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb4Q6P8W9 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb4Q6P8W9 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Hmgb4Q6P8W9 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb4Q6P8W9 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC19.29■□□□□ 0.68
Hmgb4Q6P8W9 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.29■□□□□ 0.68
Hmgb4Q6P8W9 Gm10812-201ENSMUST00000099864 546 ntBASIC19.29■□□□□ 0.68
Hmgb4Q6P8W9 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb4Q6P8W9 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
Hmgb4Q6P8W9 Gm27275-201ENSMUST00000184318 272 ntBASIC19.28■□□□□ 0.68
Hmgb4Q6P8W9 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Hmgb4Q6P8W9 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb4Q6P8W9 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Hmgb4Q6P8W9 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb4Q6P8W9 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb4Q6P8W9 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb4Q6P8W9 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Hmgb4Q6P8W9 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms