Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shkbp1Q6P7W2 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shkbp1Q6P7W2 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shkbp1Q6P7W2 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Shkbp1Q6P7W2 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Shkbp1Q6P7W2 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shkbp1Q6P7W2 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.36■□□□□ 0.69
Shkbp1Q6P7W2 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shkbp1Q6P7W2 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shkbp1Q6P7W2 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Shkbp1Q6P7W2 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Shkbp1Q6P7W2 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Shkbp1Q6P7W2 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.35■□□□□ 0.69
Shkbp1Q6P7W2 Mir1199-201ENSMUST00000117015 119 ntBASIC19.35■□□□□ 0.69
Shkbp1Q6P7W2 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC19.35■□□□□ 0.69
Shkbp1Q6P7W2 Gm22325-201ENSMUST00000158904 308 ntBASIC19.35■□□□□ 0.69
Shkbp1Q6P7W2 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.35■□□□□ 0.69
Shkbp1Q6P7W2 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Shkbp1Q6P7W2 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC19.35■□□□□ 0.69
Shkbp1Q6P7W2 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
Shkbp1Q6P7W2 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Mtag2-201ENSMUST00000058665 714 ntBASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shkbp1Q6P7W2 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
Shkbp1Q6P7W2 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Shkbp1Q6P7W2 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Shkbp1Q6P7W2 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.33■□□□□ 0.69
Shkbp1Q6P7W2 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Shkbp1Q6P7W2 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Shkbp1Q6P7W2 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Shkbp1Q6P7W2 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Shkbp1Q6P7W2 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Shkbp1Q6P7W2 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Shkbp1Q6P7W2 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Shkbp1Q6P7W2 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Shkbp1Q6P7W2 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Shkbp1Q6P7W2 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Shkbp1Q6P7W2 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Shkbp1Q6P7W2 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Shkbp1Q6P7W2 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Shkbp1Q6P7W2 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Shkbp1Q6P7W2 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Shkbp1Q6P7W2 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Gm9484-201ENSMUST00000195892 1159 ntBASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Zfp783-201ENSMUST00000095946 670 ntBASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Shkbp1Q6P7W2 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Shkbp1Q6P7W2 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Shkbp1Q6P7W2 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Shkbp1Q6P7W2 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Shkbp1Q6P7W2 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Shkbp1Q6P7W2 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms