Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Gm13148-201ENSMUST00000118892 745 ntBASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rtl3Q6P1Y1 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rtl3Q6P1Y1 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Rtl3Q6P1Y1 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rtl3Q6P1Y1 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rtl3Q6P1Y1 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
Rtl3Q6P1Y1 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Rtl3Q6P1Y1 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Rtl3Q6P1Y1 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Rtl3Q6P1Y1 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Rtl3Q6P1Y1 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Rtl3Q6P1Y1 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rtl3Q6P1Y1 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Rtl3Q6P1Y1 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Gm12527-201ENSMUST00000117967 564 ntBASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rtl3Q6P1Y1 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms