Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CtcfQ61164 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CtcfQ61164 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CtcfQ61164 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CtcfQ61164 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CtcfQ61164 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CtcfQ61164 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CtcfQ61164 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CtcfQ61164 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CtcfQ61164 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CtcfQ61164 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CtcfQ61164 Gm38205-201ENSMUST00000192243 258 ntBASIC20.32■□□□□ 0.84
CtcfQ61164 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CtcfQ61164 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CtcfQ61164 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CtcfQ61164 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CtcfQ61164 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CtcfQ61164 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CtcfQ61164 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CtcfQ61164 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
CtcfQ61164 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CtcfQ61164 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CtcfQ61164 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CtcfQ61164 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC20.31■□□□□ 0.84
CtcfQ61164 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CtcfQ61164 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CtcfQ61164 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CtcfQ61164 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CtcfQ61164 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CtcfQ61164 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CtcfQ61164 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CtcfQ61164 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CtcfQ61164 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CtcfQ61164 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CtcfQ61164 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CtcfQ61164 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CtcfQ61164 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CtcfQ61164 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CtcfQ61164 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CtcfQ61164 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CtcfQ61164 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CtcfQ61164 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CtcfQ61164 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CtcfQ61164 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CtcfQ61164 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CtcfQ61164 Gm12821-201ENSMUST00000120022 600 ntBASIC20.29■□□□□ 0.84
CtcfQ61164 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CtcfQ61164 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CtcfQ61164 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CtcfQ61164 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC20.29■□□□□ 0.84
CtcfQ61164 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CtcfQ61164 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CtcfQ61164 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.28■□□□□ 0.84
CtcfQ61164 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CtcfQ61164 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CtcfQ61164 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CtcfQ61164 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CtcfQ61164 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.28■□□□□ 0.84
CtcfQ61164 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CtcfQ61164 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC20.28■□□□□ 0.84
CtcfQ61164 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CtcfQ61164 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CtcfQ61164 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CtcfQ61164 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CtcfQ61164 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.27■□□□□ 0.84
CtcfQ61164 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CtcfQ61164 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
CtcfQ61164 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CtcfQ61164 Gm27801-201ENSMUST00000184174 223 ntBASIC20.27■□□□□ 0.84
CtcfQ61164 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CtcfQ61164 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC20.27■□□□□ 0.84
CtcfQ61164 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.27■□□□□ 0.84
CtcfQ61164 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CtcfQ61164 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
CtcfQ61164 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CtcfQ61164 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.26■□□□□ 0.83
CtcfQ61164 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CtcfQ61164 Gm26833-201ENSMUST00000180899 440 ntBASIC20.26■□□□□ 0.83
CtcfQ61164 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CtcfQ61164 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CtcfQ61164 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CtcfQ61164 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CtcfQ61164 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CtcfQ61164 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CtcfQ61164 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC20.26■□□□□ 0.83
CtcfQ61164 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CtcfQ61164 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CtcfQ61164 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CtcfQ61164 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CtcfQ61164 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CtcfQ61164 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CtcfQ61164 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.25■□□□□ 0.83
CtcfQ61164 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CtcfQ61164 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CtcfQ61164 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CtcfQ61164 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CtcfQ61164 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CtcfQ61164 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CtcfQ61164 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms