Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Gm8770-201ENSMUST00000121113 1109 ntBASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim40Q3UWA4 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
Trim40Q3UWA4 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim40Q3UWA4 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim40Q3UWA4 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Trim40Q3UWA4 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Trim40Q3UWA4 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trim40Q3UWA4 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim40Q3UWA4 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim40Q3UWA4 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim40Q3UWA4 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC17.33■□□□□ 0.37
Trim40Q3UWA4 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim40Q3UWA4 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim40Q3UWA4 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim40Q3UWA4 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim40Q3UWA4 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim40Q3UWA4 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim40Q3UWA4 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim40Q3UWA4 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trim40Q3UWA4 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim40Q3UWA4 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim40Q3UWA4 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim40Q3UWA4 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms