Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf3aQ3ULJ3 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.55■□□□□ 0.72
Upf3aQ3ULJ3 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3aQ3ULJ3 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3aQ3ULJ3 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Upf3aQ3ULJ3 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.54■□□□□ 0.72
Upf3aQ3ULJ3 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3aQ3ULJ3 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3aQ3ULJ3 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf3aQ3ULJ3 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.54■□□□□ 0.72
Upf3aQ3ULJ3 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 Mir5122-201ENSMUST00000175004 89 ntBASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC19.53■□□□□ 0.72
Upf3aQ3ULJ3 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3aQ3ULJ3 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Upf3aQ3ULJ3 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Zfp783-201ENSMUST00000095946 670 ntBASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3aQ3ULJ3 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Upf3aQ3ULJ3 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Upf3aQ3ULJ3 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Upf3aQ3ULJ3 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC19.5■□□□□ 0.71
Upf3aQ3ULJ3 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.5■□□□□ 0.71
Upf3aQ3ULJ3 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Upf3aQ3ULJ3 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.5■□□□□ 0.71
Upf3aQ3ULJ3 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Upf3aQ3ULJ3 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Upf3aQ3ULJ3 Mtag2-201ENSMUST00000058665 714 ntBASIC19.5■□□□□ 0.71
Upf3aQ3ULJ3 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3aQ3ULJ3 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
Upf3aQ3ULJ3 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3aQ3ULJ3 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Upf3aQ3ULJ3 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3aQ3ULJ3 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.49■□□□□ 0.71
Upf3aQ3ULJ3 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3aQ3ULJ3 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms