Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm12382-201ENSMUST00000122005 922 ntBASIC23.72■■□□□ 1.39
Ddb1Q3U1J4 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Ddb1Q3U1J4 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Ddb1Q3U1J4 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Ddb1Q3U1J4 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
Ddb1Q3U1J4 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Ddb1Q3U1J4 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
Ddb1Q3U1J4 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 Gm45640-201ENSMUST00000210665 1896 ntBASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 Gm18959-201ENSMUST00000208954 655 ntBASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Ddb1Q3U1J4 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Ddb1Q3U1J4 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Ddb1Q3U1J4 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Ddb1Q3U1J4 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC23.7■■□□□ 1.38
Ddb1Q3U1J4 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC23.7■■□□□ 1.38
Ddb1Q3U1J4 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC23.7■■□□□ 1.38
Ddb1Q3U1J4 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Ddb1Q3U1J4 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Ddb1Q3U1J4 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Ddb1Q3U1J4 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Ddb1Q3U1J4 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
Ddb1Q3U1J4 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
Ddb1Q3U1J4 Gm10013-201ENSMUST00000106074 672 ntBASIC23.69■■□□□ 1.38
Ddb1Q3U1J4 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC23.69■■□□□ 1.38
Ddb1Q3U1J4 Gm6345-202ENSMUST00000180900 204 ntBASIC23.69■■□□□ 1.38
Ddb1Q3U1J4 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ddb1Q3U1J4 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ddb1Q3U1J4 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ddb1Q3U1J4 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Ddb1Q3U1J4 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC23.68■■□□□ 1.38
Ddb1Q3U1J4 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Ddb1Q3U1J4 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ddb1Q3U1J4 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ddb1Q3U1J4 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ddb1Q3U1J4 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ddb1Q3U1J4 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ddb1Q3U1J4 Gm8309-201ENSMUST00000206627 1448 ntBASIC23.67■■□□□ 1.38
Ddb1Q3U1J4 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ddb1Q3U1J4 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ddb1Q3U1J4 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
Ddb1Q3U1J4 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ddb1Q3U1J4 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
Ddb1Q3U1J4 Gm33142-201ENSMUST00000193913 867 ntBASIC23.67■■□□□ 1.38
Ddb1Q3U1J4 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Ddb1Q3U1J4 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ddb1Q3U1J4 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC23.67■■□□□ 1.38
Ddb1Q3U1J4 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ddb1Q3U1J4 AA414768-201ENSMUST00000121924 1257 ntBASIC23.66■■□□□ 1.38
Ddb1Q3U1J4 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC23.66■■□□□ 1.38
Ddb1Q3U1J4 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Ddb1Q3U1J4 Gm38285-201ENSMUST00000192928 922 ntBASIC23.66■■□□□ 1.38
Ddb1Q3U1J4 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC23.66■■□□□ 1.38
Ddb1Q3U1J4 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ddb1Q3U1J4 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ddb1Q3U1J4 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ddb1Q3U1J4 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ddb1Q3U1J4 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ddb1Q3U1J4 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ddb1Q3U1J4 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Ddb1Q3U1J4 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ddb1Q3U1J4 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Gm18032-201ENSMUST00000222541 538 ntBASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ddb1Q3U1J4 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC23.63■■□□□ 1.37
Ddb1Q3U1J4 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC23.63■■□□□ 1.37
Ddb1Q3U1J4 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Ddb1Q3U1J4 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC23.63■■□□□ 1.37
Ddb1Q3U1J4 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ddb1Q3U1J4 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Ddb1Q3U1J4 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ddb1Q3U1J4 Gm37352-201ENSMUST00000193908 2181 ntBASIC23.62■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms