Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Hmgb1P63158 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Hmgb1P63158 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Hmgb1P63158 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Hmgb1P63158 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Hmgb1P63158 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC20.36■□□□□ 0.85
Hmgb1P63158 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Hmgb1P63158 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Hmgb1P63158 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.36■□□□□ 0.85
Hmgb1P63158 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Hmgb1P63158 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Hmgb1P63158 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Hmgb1P63158 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Hmgb1P63158 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb1P63158 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb1P63158 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb1P63158 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb1P63158 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb1P63158 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb1P63158 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb1P63158 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.35■□□□□ 0.85
Hmgb1P63158 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.35■□□□□ 0.85
Hmgb1P63158 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.35■□□□□ 0.85
Hmgb1P63158 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.35■□□□□ 0.85
Hmgb1P63158 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Hmgb1P63158 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb1P63158 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb1P63158 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Hmgb1P63158 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.35■□□□□ 0.85
Hmgb1P63158 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmgb1P63158 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.35■□□□□ 0.85
Hmgb1P63158 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.34■□□□□ 0.85
Hmgb1P63158 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Hmgb1P63158 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Hmgb1P63158 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb1P63158 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Hmgb1P63158 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Hmgb1P63158 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Hmgb1P63158 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.33■□□□□ 0.85
Hmgb1P63158 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC20.33■□□□□ 0.85
Hmgb1P63158 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
Hmgb1P63158 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Hmgb1P63158 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Hmgb1P63158 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Hmgb1P63158 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Hmgb1P63158 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Hmgb1P63158 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Hmgb1P63158 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb1P63158 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb1P63158 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Hmgb1P63158 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb1P63158 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Hmgb1P63158 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Hmgb1P63158 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb1P63158 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb1P63158 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
Hmgb1P63158 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Hmgb1P63158 Gm19094-201ENSMUST00000209791 1246 ntBASIC20.32■□□□□ 0.84
Hmgb1P63158 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.32■□□□□ 0.84
Hmgb1P63158 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
Hmgb1P63158 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb1P63158 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb1P63158 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb1P63158 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb1P63158 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb1P63158 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb1P63158 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb1P63158 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb1P63158 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.31■□□□□ 0.84
Hmgb1P63158 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb1P63158 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb1P63158 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.31■□□□□ 0.84
Hmgb1P63158 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC20.31■□□□□ 0.84
Hmgb1P63158 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb1P63158 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb1P63158 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Hmgb1P63158 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb1P63158 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb1P63158 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb1P63158 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Hmgb1P63158 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.3■□□□□ 0.84
Hmgb1P63158 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb1P63158 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms