Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx3P48381 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx3P48381 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Dmtn-210ENSMUST00000228824 2377 ntBASIC16.73■□□□□ 0.27
Rfx3P48381 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Rfx3P48381 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC16.73■□□□□ 0.27
Rfx3P48381 Gm40848-201ENSMUST00000221998 324 ntBASIC16.73■□□□□ 0.27
Rfx3P48381 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC16.73■□□□□ 0.27
Rfx3P48381 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx3P48381 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC16.72■□□□□ 0.27
Rfx3P48381 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Rfx3P48381 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Rfx3P48381 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx3P48381 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx3P48381 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx3P48381 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx3P48381 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx3P48381 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC16.71■□□□□ 0.27
Rfx3P48381 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Rfx3P48381 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC16.71■□□□□ 0.27
Rfx3P48381 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx3P48381 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx3P48381 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx3P48381 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx3P48381 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Rfx3P48381 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx3P48381 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
Rfx3P48381 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx3P48381 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx3P48381 Gm19439-201ENSMUST00000198195 2273 ntBASIC16.71■□□□□ 0.27
Rfx3P48381 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Rfx3P48381 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Rfx3P48381 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Rfx3P48381 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Rfx3P48381 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Rfx3P48381 Cdc34b-202ENSMUST00000188741 1252 ntBASIC16.7■□□□□ 0.26
Rfx3P48381 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Rfx3P48381 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx3P48381 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC16.69■□□□□ 0.26
Rfx3P48381 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Rfx3P48381 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
Rfx3P48381 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC16.69■□□□□ 0.26
Rfx3P48381 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Rfx3P48381 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC16.69■□□□□ 0.26
Rfx3P48381 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC16.69■□□□□ 0.26
Rfx3P48381 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx3P48381 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC16.68■□□□□ 0.26
Rfx3P48381 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC16.68■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms