Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Cdx1P18111 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC14.88□□□□□ -0.03
Cdx1P18111 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC14.88□□□□□ -0.03
Cdx1P18111 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdx1P18111 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx1P18111 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx1P18111 AC122335.2-201ENSMUST00000213901 6181 ntBASIC14.87□□□□□ -0.03
Cdx1P18111 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx1P18111 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx1P18111 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx1P18111 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Cdx1P18111 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC14.87□□□□□ -0.03
Cdx1P18111 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx1P18111 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Cdx1P18111 Gm43137-201ENSMUST00000198052 594 ntBASIC14.87□□□□□ -0.03
Cdx1P18111 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Cdx1P18111 Gm15743-202ENSMUST00000182690 1901 ntBASIC14.87□□□□□ -0.03
Cdx1P18111 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx1P18111 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx1P18111 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx1P18111 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx1P18111 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdx1P18111 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Cdx1P18111 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Cdx1P18111 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Cdx1P18111 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Cdx1P18111 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Cdx1P18111 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC14.86□□□□□ -0.03
Cdx1P18111 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Cdx1P18111 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
Cdx1P18111 Gm18284-201ENSMUST00000172604 624 ntBASIC14.86□□□□□ -0.03
Cdx1P18111 Krt8-ps-201ENSMUST00000208495 945 ntBASIC14.86□□□□□ -0.03
Cdx1P18111 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
Cdx1P18111 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Cdx1P18111 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Gm7292-201ENSMUST00000194706 2527 ntBASIC14.86□□□□□ -0.03
Cdx1P18111 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdx1P18111 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Cdx1P18111 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC14.85□□□□□ -0.03
Cdx1P18111 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC14.85□□□□□ -0.03
Cdx1P18111 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Cdx1P18111 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC14.85□□□□□ -0.03
Cdx1P18111 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC14.85□□□□□ -0.03
Cdx1P18111 Gm7143-201ENSMUST00000222811 859 ntBASIC14.85□□□□□ -0.03
Cdx1P18111 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Cdx1P18111 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms