Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC20.11■□□□□ 0.81
Chmp6P0C0A3 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Chmp6P0C0A3 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Chmp6P0C0A3 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Chmp6P0C0A3 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Chmp6P0C0A3 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Gm6420-201ENSMUST00000193885 723 ntBASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Gm43231-201ENSMUST00000202960 2258 ntBASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Chmp6P0C0A3 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.08■□□□□ 0.81
Chmp6P0C0A3 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Chmp6P0C0A3 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Chmp6P0C0A3 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Chmp6P0C0A3 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Chmp6P0C0A3 Gm13534-201ENSMUST00000121169 513 ntBASIC20.08■□□□□ 0.81
Chmp6P0C0A3 Nespas-201ENSMUST00000143738 1083 ntBASIC20.08■□□□□ 0.81
Chmp6P0C0A3 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Chmp6P0C0A3 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Chmp6P0C0A3 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Chmp6P0C0A3 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Chmp6P0C0A3 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Chmp6P0C0A3 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Chmp6P0C0A3 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.08■□□□□ 0.8
Chmp6P0C0A3 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Chmp6P0C0A3 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Chmp6P0C0A3 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Chmp6P0C0A3 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Gm37179-201ENSMUST00000194862 823 ntBASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Chmp6P0C0A3 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms