Protein–RNA interactions for Protein: E0CXC2

Gm28043, E3 ubiquitin-protein ligase RNF8, mousemouse

Predictions only

Length 719 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm28043E0CXC2 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Gm28043E0CXC2 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Gm28043E0CXC2 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Gm28043E0CXC2 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Gm28043E0CXC2 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Gm28043E0CXC2 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Gm28043E0CXC2 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Cdc34b-202ENSMUST00000188741 1252 ntBASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Gm28043E0CXC2 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Gm28043E0CXC2 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Gm28043E0CXC2 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Gm28043E0CXC2 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Gm28043E0CXC2 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.52■□□□□ 0.56
Gm28043E0CXC2 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC18.52■□□□□ 0.56
Gm28043E0CXC2 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Gm28043E0CXC2 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Gm28043E0CXC2 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Gm28043E0CXC2 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Gm28043E0CXC2 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Gm28043E0CXC2 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Gm28043E0CXC2 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Gm28043E0CXC2 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Gm28043E0CXC2 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Gm28043E0CXC2 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Gm28043E0CXC2 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 BC021767-201ENSMUST00000126387 1716 ntBASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Gm43060-201ENSMUST00000200621 289 ntBASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Gm40848-201ENSMUST00000221998 324 ntBASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.5■□□□□ 0.55
Gm28043E0CXC2 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Gm28043E0CXC2 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Gm27801-201ENSMUST00000184174 223 ntBASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Gm44832-201ENSMUST00000208849 2303 ntBASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Gm28043E0CXC2 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Gm28043E0CXC2 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms