Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Pcdhgb8A0A140LI48 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Pcdhgb8A0A140LI48 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Pcdhgb8A0A140LI48 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC16.72■□□□□ 0.27
Pcdhgb8A0A140LI48 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Pcdhgb8A0A140LI48 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
Pcdhgb8A0A140LI48 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Pcdhgb8A0A140LI48 Rncr4-201ENSMUST00000194541 2234 ntBASIC16.72■□□□□ 0.27
Pcdhgb8A0A140LI48 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
Pcdhgb8A0A140LI48 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Pcdhgb8A0A140LI48 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Pcdhgb8A0A140LI48 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC16.71■□□□□ 0.27
Pcdhgb8A0A140LI48 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Pcdhgb8A0A140LI48 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Pcdhgb8A0A140LI48 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Pcdhgb8A0A140LI48 Gm40848-201ENSMUST00000221998 324 ntBASIC16.71■□□□□ 0.27
Pcdhgb8A0A140LI48 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Pcdhgb8A0A140LI48 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Pcdhgb8A0A140LI48 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Pcdhgb8A0A140LI48 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Slc35b2-207ENSMUST00000226086 850 ntBASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Dmtn-210ENSMUST00000228824 2377 ntBASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Pcdhgb8A0A140LI48 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Dmtn-207ENSMUST00000228001 2437 ntBASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Pcdhgb8A0A140LI48 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pcdhgb8A0A140LI48 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC16.68■□□□□ 0.26
Pcdhgb8A0A140LI48 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pcdhgb8A0A140LI48 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Pcdhgb8A0A140LI48 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pcdhgb8A0A140LI48 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pcdhgb8A0A140LI48 Gm43548-201ENSMUST00000197139 2353 ntBASIC16.68■□□□□ 0.26
Pcdhgb8A0A140LI48 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pcdhgb8A0A140LI48 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Pcdhgb8A0A140LI48 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pcdhgb8A0A140LI48 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Gm10129-202ENSMUST00000193100 1316 ntBASIC16.67■□□□□ 0.26
Pcdhgb8A0A140LI48 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Gm43702-201ENSMUST00000198772 2546 ntBASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pcdhgb8A0A140LI48 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pcdhgb8A0A140LI48 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Pcdhgb8A0A140LI48 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Pcdhgb8A0A140LI48 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pcdhgb8A0A140LI48 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pcdhgb8A0A140LI48 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms