Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm20274-201ENSMUST00000206967 584 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Gm5535-206ENSMUST00000210067 679 ntTSL 5 BASIC9.02□□□□□ -0.97
Traf1P39428 Gm7368-201ENSMUST00000213307 367 ntBASIC9.02□□□□□ -0.97
Traf1P39428 AC102582.1-201ENSMUST00000215376 378 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Zfp874a-208ENSMUST00000225479 1092 ntBASIC9.02□□□□□ -0.97
Traf1P39428 AC159205.1-201ENSMUST00000225513 1099 ntBASIC9.02□□□□□ -0.97
Traf1P39428 AC124103.1-201ENSMUST00000227564 1027 ntBASIC9.02□□□□□ -0.97
Traf1P39428 AC130673.1-201ENSMUST00000227992 435 ntBASIC9.02□□□□□ -0.97
Traf1P39428 AC161537.1-202ENSMUST00000228450 868 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Ifitm5-201ENSMUST00000026562 765 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 1700001C19Rik-202ENSMUST00000073143 614 ntAPPRIS ALT2 TSL 2 BASIC9.02□□□□□ -0.97
Traf1P39428 B230118H07Rik-201ENSMUST00000090513 969 ntAPPRIS P2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Zfp120-202ENSMUST00000094538 1245 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
Traf1P39428 Hnrnpa3-203ENSMUST00000111962 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Erp44-201ENSMUST00000030028 2624 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Gm38339-201ENSMUST00000195479 1829 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Olfr531-204ENSMUST00000217167 3874 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
Traf1P39428 Olfr93-203ENSMUST00000219235 2929 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
Traf1P39428 Supt20-202ENSMUST00000170552 1968 ntAPPRIS P2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Gm45194-202ENSMUST00000207962 1991 ntAPPRIS P5 TSL 5 BASIC9.02□□□□□ -0.97
Traf1P39428 Specc1-207ENSMUST00000201364 4955 ntAPPRIS P4 TSL 5 BASIC9.02□□□□□ -0.97
Traf1P39428 Pax5-201ENSMUST00000014174 8004 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Gm9866-203ENSMUST00000182592 8487 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Ofcc1-201ENSMUST00000054635 2816 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Cbx3-204ENSMUST00000114446 1719 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
Traf1P39428 Serpina3a-203ENSMUST00000185595 1720 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Csnk1d-202ENSMUST00000070575 3500 ntAPPRIS ALT1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Gm20388-201ENSMUST00000127664 3953 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
Traf1P39428 Gm15509-201ENSMUST00000162615 2162 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Gm29226-201ENSMUST00000186871 2167 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Dclre1b-204ENSMUST00000106834 3705 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
Traf1P39428 Tmem245-201ENSMUST00000068792 15981 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
Traf1P39428 Slc3a1-201ENSMUST00000024944 2307 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Supt20-203ENSMUST00000197502 2751 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
Traf1P39428 Zfp386-204ENSMUST00000183125 4779 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Dennd6a-203ENSMUST00000224111 2692 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Phf11a-201ENSMUST00000062307 1354 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 AC112265.1-201ENSMUST00000213522 1501 ntTSL 5 BASIC9.01□□□□□ -0.97
Traf1P39428 Gpr89-201ENSMUST00000029738 4598 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Ace2-202ENSMUST00000112271 3578 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Hipk2-207ENSMUST00000162359 3867 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Zfp59-201ENSMUST00000108331 1962 ntAPPRIS P1 TSL 2 BASIC9.01□□□□□ -0.97
Traf1P39428 AC105958.1-201ENSMUST00000214783 2144 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Gm26939-201ENSMUST00000177146 2261 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Lyg2-201ENSMUST00000078307 2564 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Gm15834-202ENSMUST00000139825 2613 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Gm10680-201ENSMUST00000156612 702 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Gm26182-201ENSMUST00000157688 116 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Gm22948-201ENSMUST00000158561 243 ntBASIC9.01□□□□□ -0.97
Traf1P39428 AI480526-201ENSMUST00000159072 957 ntTSL 2 BASIC9.01□□□□□ -0.97
Traf1P39428 Gm8164-201ENSMUST00000169120 1192 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Mir5100-201ENSMUST00000174993 64 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Trav22-201ENSMUST00000198117 346 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Gm27680-202ENSMUST00000199221 807 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Gm7542-201ENSMUST00000201140 777 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Klhl5-205ENSMUST00000204348 3380 ntTSL 5 BASIC9.01□□□□□ -0.97
Traf1P39428 Gm33782-201ENSMUST00000218518 517 ntTSL 3 BASIC9.01□□□□□ -0.97
Traf1P39428 Gm33467-201ENSMUST00000221885 652 ntTSL 3 BASIC9.01□□□□□ -0.97
Traf1P39428 Rtp4-201ENSMUST00000038423 1573 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 H2-M11-201ENSMUST00000041964 1006 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Odf3l1-201ENSMUST00000055036 1080 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Lats2-203ENSMUST00000077981 786 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Gm25926-201ENSMUST00000082899 160 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Mir135b-201ENSMUST00000083501 97 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Olfr676-201ENSMUST00000098162 954 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
Traf1P39428 Unc79-201ENSMUST00000085079 7762 ntAPPRIS ALT2 TSL 2 BASIC9.01□□□□□ -0.97
Traf1P39428 Cfap74-203ENSMUST00000105619 2364 ntAPPRIS ALT2 TSL 2 BASIC9.01□□□□□ -0.97
Traf1P39428 Nfkbiz-203ENSMUST00000114457 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Gpr165-201ENSMUST00000033554 3170 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Gm37109-201ENSMUST00000195475 2254 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Slc22a8-202ENSMUST00000170817 3398 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Traf1P39428 Shprh-203ENSMUST00000159541 6679 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Traf1P39428 Gm44249-201ENSMUST00000204538 1805 ntBASIC9.01□□□□□ -0.97
Traf1P39428 Rag1-201ENSMUST00000078494 6608 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Ppfia2-203ENSMUST00000217854 8885 ntAPPRIS P2 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Ugt3a2-201ENSMUST00000072403 2329 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 1700074P13Rik-202ENSMUST00000122181 1542 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Gm20609-201ENSMUST00000177104 1527 ntTSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Mrps17-203ENSMUST00000119576 5061 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
Traf1P39428 Prkd3-202ENSMUST00000118768 2847 ntTSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Senp6-203ENSMUST00000165607 3495 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Gm17083-201ENSMUST00000165849 1366 ntBASIC9□□□□□ -0.97
Traf1P39428 Ms4a6b-205ENSMUST00000163078 2680 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Traf1P39428 Slc7a14-201ENSMUST00000091259 8897 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 4930453H23Rik-201ENSMUST00000125569 1719 ntTSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Tgfb3-201ENSMUST00000003687 3383 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Gm11872-201ENSMUST00000141819 2219 ntTSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Calb1-201ENSMUST00000029876 4222 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Elmod2-206ENSMUST00000177594 4704 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Dph5-201ENSMUST00000043342 1576 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Gm46123-201ENSMUST00000217447 6424 ntTSL 5 BASIC9□□□□□ -0.97
Traf1P39428 Naa11-201ENSMUST00000060265 3424 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 AC166341.5-201ENSMUST00000222206 1400 ntBASIC9□□□□□ -0.97
Traf1P39428 5330416C01Rik-203ENSMUST00000144993 3287 ntTSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 B230118H07Rik-203ENSMUST00000111231 2273 ntAPPRIS P2 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Lrrc51-203ENSMUST00000106963 835 ntTSL 2 BASIC9□□□□□ -0.97
Traf1P39428 Cisd3-202ENSMUST00000107584 546 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Traf1P39428 Gm22152-201ENSMUST00000116966 125 ntBASIC9□□□□□ -0.97
Traf1P39428 Gm15578-201ENSMUST00000117320 475 ntBASIC9□□□□□ -0.97
Traf1P39428 Gm15054-201ENSMUST00000117393 281 ntBASIC9□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 80.9 ms