Protein–RNA interactions for Protein: P28357

Hoxd9, Homeobox protein Hox-D9, mousemouse

Predictions only

Length 339 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd9P28357 Cetn1-201ENSMUST00000062769 1247 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Olfr818-201ENSMUST00000074308 957 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
Hoxd9P28357 Vmn1r80-201ENSMUST00000075053 927 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
Hoxd9P28357 Olfr441-201ENSMUST00000095954 933 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
Hoxd9P28357 Cldn34b1-201ENSMUST00000096852 1079 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Adcy9-202ENSMUST00000117801 4507 ntAPPRIS P3 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Tsnaxip1-203ENSMUST00000212566 1993 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Gm45629-201ENSMUST00000209629 2546 ntBASIC8.07□□□□□ -1.12
Hoxd9P28357 L1td1-202ENSMUST00000154279 2942 ntAPPRIS P2 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Gca-201ENSMUST00000028257 3330 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Thrb-202ENSMUST00000022304 6200 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Dusp3-202ENSMUST00000107172 4445 ntAPPRIS P1 TSL 3 BASIC8.07□□□□□ -1.12
Hoxd9P28357 Mtfr1-203ENSMUST00000119865 1367 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Paqr7-202ENSMUST00000095074 3550 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Etl4-203ENSMUST00000114604 4786 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Vsig1-201ENSMUST00000033806 2707 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 BC016579-201ENSMUST00000036732 2192 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Zfp72-201ENSMUST00000091481 1629 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Ttc16-201ENSMUST00000066478 2979 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 C6-201ENSMUST00000022788 2447 ntAPPRIS P2 TSL 5 BASIC8.07□□□□□ -1.12
Hoxd9P28357 St6gal1-206ENSMUST00000178797 4177 ntAPPRIS P1 TSL 5 BASIC8.07□□□□□ -1.12
Hoxd9P28357 Clasp2-207ENSMUST00000214522 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
Hoxd9P28357 Gm15577-201ENSMUST00000144350 2293 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Nnt-202ENSMUST00000099149 3464 ntAPPRIS P2 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Atg4a-ps-201ENSMUST00000117271 2115 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
Hoxd9P28357 1700093K21Rik-204ENSMUST00000169264 1320 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Itgb1bp2-201ENSMUST00000033674 1314 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Dcdc2a-202ENSMUST00000069614 6634 ntAPPRIS P3 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Apobec4-201ENSMUST00000068875 1566 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Zmiz2-203ENSMUST00000109785 3542 ntAPPRIS ALT2 TSL 5 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Drp2-204ENSMUST00000113228 3141 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Mak-201ENSMUST00000021792 3385 ntAPPRIS P3 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Pdzrn4-201ENSMUST00000035399 3393 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Il1f5-202ENSMUST00000114490 1403 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Zfp445-201ENSMUST00000056467 2961 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Wdr37-201ENSMUST00000021572 4526 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm2694-201ENSMUST00000180700 2314 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Ftsj1-203ENSMUST00000115595 1656 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm43465-201ENSMUST00000200367 2802 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm42613-201ENSMUST00000199975 1931 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gpr1-201ENSMUST00000050536 1940 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 4932415M13Rik-202ENSMUST00000184645 3063 ntTSL 2 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Rufy3-207ENSMUST00000199312 2182 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Igkv3-4-201ENSMUST00000103401 360 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Ighv14-2-201ENSMUST00000103467 351 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Spata17-202ENSMUST00000110945 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm12385-201ENSMUST00000117439 795 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Rhox11-ps2-201ENSMUST00000117962 451 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm13454-201ENSMUST00000118166 483 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm13501-201ENSMUST00000118477 979 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Mup-ps24-201ENSMUST00000119939 286 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Tpt1-ps1-201ENSMUST00000120257 436 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm14741-201ENSMUST00000120777 1009 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm11933-201ENSMUST00000121550 375 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm14813-201ENSMUST00000122291 395 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm13833-201ENSMUST00000146766 719 ntTSL 3 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm12863-201ENSMUST00000155069 536 ntTSL 2 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm8813-201ENSMUST00000155930 595 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm25219-201ENSMUST00000157545 330 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm22668-201ENSMUST00000158716 260 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm17053-201ENSMUST00000163501 495 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm8340-201ENSMUST00000165508 1191 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm7352-201ENSMUST00000167577 1192 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Vmn1r170-201ENSMUST00000170166 915 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Elf5-207ENSMUST00000171693 965 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
Hoxd9P28357 H2-Aa-204ENSMUST00000174751 826 ntTSL 3 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Mir3473c-201ENSMUST00000175262 81 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Esd-203ENSMUST00000175887 809 ntTSL 5 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Esd-208ENSMUST00000177137 853 ntTSL 5 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Esd-209ENSMUST00000177181 835 ntTSL 5 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm8614-201ENSMUST00000182528 978 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm26974-202ENSMUST00000183263 930 ntTSL 2 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm27150-201ENSMUST00000183441 1038 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm27153-201ENSMUST00000184492 407 ntTSL 2 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm27228-201ENSMUST00000184500 1038 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm20257-201ENSMUST00000185352 936 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 1700049E22Rik-201ENSMUST00000187986 507 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 D7Ertd128e-201ENSMUST00000189744 928 ntTSL 2 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm38213-201ENSMUST00000193203 173 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm37294-201ENSMUST00000193461 494 ntTSL 3 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm37148-201ENSMUST00000195097 716 ntTSL 5 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm42625-201ENSMUST00000198611 922 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm30052-201ENSMUST00000211951 913 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm8948-201ENSMUST00000216371 370 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Tespa1-202ENSMUST00000217702 1102 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 AC102369.1-201ENSMUST00000218415 373 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Pln-203ENSMUST00000218468 760 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm30239-202ENSMUST00000223193 631 ntTSL 5 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Diaph3-206ENSMUST00000226745 713 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Cox7b2-201ENSMUST00000050129 542 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 1700024P04Rik-201ENSMUST00000054425 481 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Olfr167-201ENSMUST00000054606 939 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Olfr1502-201ENSMUST00000074221 951 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Olfr344-201ENSMUST00000075474 930 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Vmn1r237-201ENSMUST00000077301 950 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm25475-201ENSMUST00000082825 180 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Gm22575-201ENSMUST00000082981 110 ntBASIC8.06□□□□□ -1.12
Hoxd9P28357 Scfd2-201ENSMUST00000072857 3672 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Tubgcp5-201ENSMUST00000032627 3905 ntAPPRIS P2 TSL 1 (best) BASIC8.06□□□□□ -1.12
Hoxd9P28357 Frk-201ENSMUST00000019913 4696 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
Retrieved 100 of 76,532 protein–RNA pairs in 102.7 ms