Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Gm9847-201ENSMUST00000052528 599 ntBASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28aQ8CEI3 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28aQ8CEI3 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28aQ8CEI3 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28aQ8CEI3 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28aQ8CEI3 Gm12251-201ENSMUST00000117893 792 ntBASIC19.61■□□□□ 0.73
Ccdc28aQ8CEI3 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Ccdc28aQ8CEI3 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28aQ8CEI3 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28aQ8CEI3 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28aQ8CEI3 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc28aQ8CEI3 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Ccdc28aQ8CEI3 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc28aQ8CEI3 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.73
Ccdc28aQ8CEI3 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc28aQ8CEI3 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc28aQ8CEI3 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Ccdc28aQ8CEI3 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc28aQ8CEI3 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc28aQ8CEI3 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc28aQ8CEI3 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc28aQ8CEI3 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Ccdc28aQ8CEI3 Gm11421-201ENSMUST00000122124 294 ntBASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ccdc28aQ8CEI3 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ccdc28aQ8CEI3 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ccdc28aQ8CEI3 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms