Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim47Q8C0E3 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.64■□□□□ 0.89
Trim47Q8C0E3 Gm12669-201ENSMUST00000122162 1009 ntBASIC20.64■□□□□ 0.89
Trim47Q8C0E3 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC20.64■□□□□ 0.89
Trim47Q8C0E3 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.64■□□□□ 0.89
Trim47Q8C0E3 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.64■□□□□ 0.89
Trim47Q8C0E3 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.64■□□□□ 0.89
Trim47Q8C0E3 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim47Q8C0E3 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim47Q8C0E3 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim47Q8C0E3 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Trim47Q8C0E3 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim47Q8C0E3 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Gm27011-201ENSMUST00000182352 972 ntBASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.62■□□□□ 0.89
Trim47Q8C0E3 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim47Q8C0E3 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.62■□□□□ 0.89
Trim47Q8C0E3 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Gm12527-201ENSMUST00000117967 564 ntBASIC20.61■□□□□ 0.89
Trim47Q8C0E3 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Rab3c-203ENSMUST00000224180 967 ntBASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.61■□□□□ 0.89
Trim47Q8C0E3 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim47Q8C0E3 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Iqck-206ENSMUST00000208658 2891 ntBASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim47Q8C0E3 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.59■□□□□ 0.89
Trim47Q8C0E3 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms