Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Gm43859-201ENSMUST00000200075 1412 ntBASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lig4Q8BTF7 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig4Q8BTF7 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
Lig4Q8BTF7 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lig4Q8BTF7 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC19.67■□□□□ 0.74
Lig4Q8BTF7 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Lig4Q8BTF7 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Lig4Q8BTF7 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lig4Q8BTF7 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC19.67■□□□□ 0.74
Lig4Q8BTF7 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lig4Q8BTF7 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lig4Q8BTF7 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lig4Q8BTF7 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Lig4Q8BTF7 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lig4Q8BTF7 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lig4Q8BTF7 Gm26524-201ENSMUST00000192339 390 ntBASIC19.66■□□□□ 0.74
Lig4Q8BTF7 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.66■□□□□ 0.74
Lig4Q8BTF7 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC19.66■□□□□ 0.74
Lig4Q8BTF7 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
Lig4Q8BTF7 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lig4Q8BTF7 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Lig4Q8BTF7 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig4Q8BTF7 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig4Q8BTF7 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lig4Q8BTF7 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC19.65■□□□□ 0.74
Lig4Q8BTF7 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lig4Q8BTF7 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig4Q8BTF7 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig4Q8BTF7 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lig4Q8BTF7 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig4Q8BTF7 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.65■□□□□ 0.74
Lig4Q8BTF7 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig4Q8BTF7 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lig4Q8BTF7 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Lig4Q8BTF7 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lig4Q8BTF7 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Lig4Q8BTF7 Rab3c-203ENSMUST00000224180 967 ntBASIC19.64■□□□□ 0.73
Lig4Q8BTF7 AC122769.4-201ENSMUST00000228166 901 ntBASIC19.64■□□□□ 0.73
Lig4Q8BTF7 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lig4Q8BTF7 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.64■□□□□ 0.73
Lig4Q8BTF7 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Lig4Q8BTF7 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lig4Q8BTF7 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig4Q8BTF7 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig4Q8BTF7 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Lig4Q8BTF7 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.62■□□□□ 0.73
Lig4Q8BTF7 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig4Q8BTF7 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Lig4Q8BTF7 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig4Q8BTF7 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig4Q8BTF7 Gm44672-201ENSMUST00000206944 1098 ntBASIC19.62■□□□□ 0.73
Lig4Q8BTF7 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.62■□□□□ 0.73
Lig4Q8BTF7 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms