Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Shkbp1Q6P7W2 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Shkbp1Q6P7W2 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.46■□□□□ 0.71
Shkbp1Q6P7W2 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Shkbp1Q6P7W2 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Shkbp1Q6P7W2 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Shkbp1Q6P7W2 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.45■□□□□ 0.7
Shkbp1Q6P7W2 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.45■□□□□ 0.7
Shkbp1Q6P7W2 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC19.45■□□□□ 0.7
Shkbp1Q6P7W2 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Shkbp1Q6P7W2 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Shkbp1Q6P7W2 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.44■□□□□ 0.7
Shkbp1Q6P7W2 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Shkbp1Q6P7W2 Gm11927-201ENSMUST00000118472 759 ntBASIC19.44■□□□□ 0.7
Shkbp1Q6P7W2 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.44■□□□□ 0.7
Shkbp1Q6P7W2 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.44■□□□□ 0.7
Shkbp1Q6P7W2 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Shkbp1Q6P7W2 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Shkbp1Q6P7W2 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Shkbp1Q6P7W2 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Shkbp1Q6P7W2 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
Shkbp1Q6P7W2 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Shkbp1Q6P7W2 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 Gm15378-201ENSMUST00000121894 207 ntBASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shkbp1Q6P7W2 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Flg-201ENSMUST00000050758 1488 ntBASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Shkbp1Q6P7W2 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shkbp1Q6P7W2 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shkbp1Q6P7W2 Gm715-201ENSMUST00000117865 831 ntBASIC19.41■□□□□ 0.7
Shkbp1Q6P7W2 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC19.41■□□□□ 0.7
Shkbp1Q6P7W2 AL672049.1-201ENSMUST00000197943 91 ntBASIC19.41■□□□□ 0.7
Shkbp1Q6P7W2 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shkbp1Q6P7W2 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shkbp1Q6P7W2 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shkbp1Q6P7W2 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shkbp1Q6P7W2 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shkbp1Q6P7W2 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Shkbp1Q6P7W2 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Shkbp1Q6P7W2 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
Shkbp1Q6P7W2 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 AC158538.1-201ENSMUST00000225870 294 ntBASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shkbp1Q6P7W2 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms