Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Gm4968-201ENSMUST00000071458 858 ntBASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rtl3Q6P1Y1 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rtl3Q6P1Y1 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Gm10653-202ENSMUST00000139570 835 ntBASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rtl3Q6P1Y1 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rtl3Q6P1Y1 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Gm7290-201ENSMUST00000104990 617 ntBASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Gm12918-201ENSMUST00000120234 636 ntBASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Gm15710-201ENSMUST00000121821 636 ntBASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Gm5075-201ENSMUST00000196916 622 ntBASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rtl3Q6P1Y1 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Rtl3Q6P1Y1 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rtl3Q6P1Y1 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.15■□□□□ 0.66
Rtl3Q6P1Y1 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rtl3Q6P1Y1 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.15■□□□□ 0.66
Rtl3Q6P1Y1 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rtl3Q6P1Y1 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Rtl3Q6P1Y1 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Rtl3Q6P1Y1 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.15■□□□□ 0.66
Rtl3Q6P1Y1 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rtl3Q6P1Y1 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Rtl3Q6P1Y1 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Gm6211-202ENSMUST00000167849 925 ntBASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rtl3Q6P1Y1 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms