Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col11a1Q61245 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col11a1Q61245 Gm8309-201ENSMUST00000206627 1448 ntBASIC21.13■□□□□ 0.97
Col11a1Q61245 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col11a1Q61245 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC21.13■□□□□ 0.97
Col11a1Q61245 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col11a1Q61245 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col11a1Q61245 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Col11a1Q61245 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC21.13■□□□□ 0.97
Col11a1Q61245 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col11a1Q61245 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col11a1Q61245 AC159205.6-201ENSMUST00000224935 887 ntBASIC21.13■□□□□ 0.97
Col11a1Q61245 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col11a1Q61245 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col11a1Q61245 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col11a1Q61245 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col11a1Q61245 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col11a1Q61245 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC21.12■□□□□ 0.97
Col11a1Q61245 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col11a1Q61245 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC21.12■□□□□ 0.97
Col11a1Q61245 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC21.12■□□□□ 0.97
Col11a1Q61245 Gm18959-201ENSMUST00000208954 655 ntBASIC21.12■□□□□ 0.97
Col11a1Q61245 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col11a1Q61245 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Col11a1Q61245 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col11a1Q61245 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col11a1Q61245 Gm33142-201ENSMUST00000193913 867 ntBASIC21.11■□□□□ 0.97
Col11a1Q61245 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col11a1Q61245 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col11a1Q61245 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col11a1Q61245 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col11a1Q61245 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col11a1Q61245 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.1■□□□□ 0.97
Col11a1Q61245 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Col11a1Q61245 Gm10013-201ENSMUST00000106074 672 ntBASIC21.1■□□□□ 0.97
Col11a1Q61245 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col11a1Q61245 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col11a1Q61245 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col11a1Q61245 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col11a1Q61245 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col11a1Q61245 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col11a1Q61245 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col11a1Q61245 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col11a1Q61245 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col11a1Q61245 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col11a1Q61245 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Col11a1Q61245 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC21.09■□□□□ 0.97
Col11a1Q61245 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col11a1Q61245 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col11a1Q61245 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col11a1Q61245 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col11a1Q61245 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col11a1Q61245 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col11a1Q61245 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC21.08■□□□□ 0.97
Col11a1Q61245 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Col11a1Q61245 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col11a1Q61245 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col11a1Q61245 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Col11a1Q61245 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col11a1Q61245 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Col11a1Q61245 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col11a1Q61245 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC21.07■□□□□ 0.96
Col11a1Q61245 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col11a1Q61245 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col11a1Q61245 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
Col11a1Q61245 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.07■□□□□ 0.96
Col11a1Q61245 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col11a1Q61245 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC21.06■□□□□ 0.96
Col11a1Q61245 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col11a1Q61245 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col11a1Q61245 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC21.06■□□□□ 0.96
Col11a1Q61245 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col11a1Q61245 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC21.06■□□□□ 0.96
Col11a1Q61245 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col11a1Q61245 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Col11a1Q61245 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
Col11a1Q61245 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col11a1Q61245 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col11a1Q61245 Gm45640-201ENSMUST00000210665 1896 ntBASIC21.05■□□□□ 0.96
Col11a1Q61245 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col11a1Q61245 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col11a1Q61245 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col11a1Q61245 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col11a1Q61245 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col11a1Q61245 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col11a1Q61245 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Col11a1Q61245 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col11a1Q61245 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Col11a1Q61245 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
Col11a1Q61245 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col11a1Q61245 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC21.04■□□□□ 0.96
Col11a1Q61245 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col11a1Q61245 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col11a1Q61245 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Col11a1Q61245 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Col11a1Q61245 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col11a1Q61245 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col11a1Q61245 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col11a1Q61245 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Col11a1Q61245 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms