Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Gm6139-201ENSMUST00000079261 882 ntBASIC14.95□□□□□ -0.02
Trav6-3Q5R1E6 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC14.95□□□□□ -0.02
Trav6-3Q5R1E6 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trav6-3Q5R1E6 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trav6-3Q5R1E6 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trav6-3Q5R1E6 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Trav6-3Q5R1E6 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trav6-3Q5R1E6 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Trav6-3Q5R1E6 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 AC123834.2-201ENSMUST00000224038 2340 ntBASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Gm43182-201ENSMUST00000199476 2528 ntBASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trav6-3Q5R1E6 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Gm5953-201ENSMUST00000220644 2616 ntBASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Gm14281-201ENSMUST00000121700 1294 ntBASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trav6-3Q5R1E6 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Gm40848-201ENSMUST00000221998 324 ntBASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trav6-3Q5R1E6 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trav6-3Q5R1E6 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trav6-3Q5R1E6 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms