Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Gm45906-201ENSMUST00000208911 1430 ntBASIC21.19■□□□□ 0.98
Usp28Q5I043 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp28Q5I043 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp28Q5I043 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Usp28Q5I043 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.18■□□□□ 0.98
Usp28Q5I043 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.18■□□□□ 0.98
Usp28Q5I043 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.18■□□□□ 0.98
Usp28Q5I043 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Usp28Q5I043 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC21.18■□□□□ 0.98
Usp28Q5I043 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp28Q5I043 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp28Q5I043 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Usp28Q5I043 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Usp28Q5I043 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
Usp28Q5I043 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.17■□□□□ 0.98
Usp28Q5I043 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.17■□□□□ 0.98
Usp28Q5I043 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp28Q5I043 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp28Q5I043 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp28Q5I043 Gm10167-201ENSMUST00000150411 1479 ntBASIC21.16■□□□□ 0.98
Usp28Q5I043 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp28Q5I043 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.16■□□□□ 0.98
Usp28Q5I043 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC21.16■□□□□ 0.98
Usp28Q5I043 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp28Q5I043 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp28Q5I043 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp28Q5I043 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp28Q5I043 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Usp28Q5I043 Gm43060-201ENSMUST00000200621 289 ntBASIC21.15■□□□□ 0.98
Usp28Q5I043 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.15■□□□□ 0.98
Usp28Q5I043 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp28Q5I043 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp28Q5I043 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Usp28Q5I043 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC21.15■□□□□ 0.98
Usp28Q5I043 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp28Q5I043 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Usp28Q5I043 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp28Q5I043 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp28Q5I043 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp28Q5I043 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp28Q5I043 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp28Q5I043 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Usp28Q5I043 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usp28Q5I043 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp28Q5I043 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC21.14■□□□□ 0.97
Usp28Q5I043 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.14■□□□□ 0.97
Usp28Q5I043 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC21.14■□□□□ 0.97
Usp28Q5I043 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp28Q5I043 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp28Q5I043 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp28Q5I043 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp28Q5I043 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Usp28Q5I043 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp28Q5I043 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp28Q5I043 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.13■□□□□ 0.97
Usp28Q5I043 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.13■□□□□ 0.97
Usp28Q5I043 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Usp28Q5I043 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp28Q5I043 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Usp28Q5I043 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Usp28Q5I043 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp28Q5I043 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Usp28Q5I043 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC21.11■□□□□ 0.97
Usp28Q5I043 Gm45141-201ENSMUST00000206502 1888 ntBASIC21.11■□□□□ 0.97
Usp28Q5I043 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Usp28Q5I043 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Usp28Q5I043 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp28Q5I043 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC21.11■□□□□ 0.97
Usp28Q5I043 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Usp28Q5I043 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC21.11■□□□□ 0.97
Usp28Q5I043 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp28Q5I043 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp28Q5I043 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms