Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Ccdc88bQ4QRL3 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC30.57■■■□□ 2.48
Ccdc88bQ4QRL3 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
Ccdc88bQ4QRL3 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Ccdc88bQ4QRL3 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC30.57■■■□□ 2.48
Ccdc88bQ4QRL3 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Ccdc88bQ4QRL3 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC30.57■■■□□ 2.48
Ccdc88bQ4QRL3 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ccdc88bQ4QRL3 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Ccdc88bQ4QRL3 Gm15853-202ENSMUST00000195518 2041 ntBASIC30.55■■■□□ 2.48
Ccdc88bQ4QRL3 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Ccdc88bQ4QRL3 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Ccdc88bQ4QRL3 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
Ccdc88bQ4QRL3 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
Ccdc88bQ4QRL3 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC30.55■■■□□ 2.48
Ccdc88bQ4QRL3 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ccdc88bQ4QRL3 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ccdc88bQ4QRL3 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC30.54■■■□□ 2.48
Ccdc88bQ4QRL3 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ccdc88bQ4QRL3 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 Gm37805-201ENSMUST00000192612 1094 ntBASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
Ccdc88bQ4QRL3 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ccdc88bQ4QRL3 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC30.52■■■□□ 2.48
Ccdc88bQ4QRL3 Mtag2-201ENSMUST00000058665 714 ntBASIC30.52■■■□□ 2.48
Ccdc88bQ4QRL3 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ccdc88bQ4QRL3 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Ccdc88bQ4QRL3 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Ccdc88bQ4QRL3 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Ccdc88bQ4QRL3 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ccdc88bQ4QRL3 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ccdc88bQ4QRL3 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ccdc88bQ4QRL3 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ccdc88bQ4QRL3 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Ccdc88bQ4QRL3 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC30.51■■■□□ 2.48
Ccdc88bQ4QRL3 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC30.51■■■□□ 2.48
Ccdc88bQ4QRL3 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC30.51■■■□□ 2.48
Ccdc88bQ4QRL3 AL672049.1-201ENSMUST00000197943 91 ntBASIC30.51■■■□□ 2.48
Ccdc88bQ4QRL3 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC30.51■■■□□ 2.48
Ccdc88bQ4QRL3 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC30.51■■■□□ 2.48
Ccdc88bQ4QRL3 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC30.51■■■□□ 2.47
Ccdc88bQ4QRL3 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
Ccdc88bQ4QRL3 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC30.51■■■□□ 2.47
Ccdc88bQ4QRL3 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 H2-K2-201ENSMUST00000174250 1049 ntBASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 AC154649.1-201ENSMUST00000227392 384 ntBASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 AC107452.1-201ENSMUST00000227963 481 ntBASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 AC175538.1-201ENSMUST00000225343 1269 ntBASIC30.5■■■□□ 2.47
Ccdc88bQ4QRL3 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Ccdc88bQ4QRL3 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Ccdc88bQ4QRL3 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Ccdc88bQ4QRL3 Gm6576-201ENSMUST00000169678 883 ntBASIC30.49■■■□□ 2.47
Ccdc88bQ4QRL3 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC30.49■■■□□ 2.47
Ccdc88bQ4QRL3 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Ccdc88bQ4QRL3 Arhgef33-211ENSMUST00000225658 473 ntBASIC30.48■■■□□ 2.47
Ccdc88bQ4QRL3 Zfp783-201ENSMUST00000095946 670 ntBASIC30.48■■■□□ 2.47
Ccdc88bQ4QRL3 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Ccdc88bQ4QRL3 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Ccdc88bQ4QRL3 Flg-201ENSMUST00000050758 1488 ntBASIC30.48■■■□□ 2.47
Ccdc88bQ4QRL3 CT010444.2-201ENSMUST00000217877 1629 ntBASIC30.47■■■□□ 2.47
Ccdc88bQ4QRL3 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Ccdc88bQ4QRL3 Mir1199-201ENSMUST00000117015 119 ntBASIC30.47■■■□□ 2.47
Ccdc88bQ4QRL3 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC30.47■■■□□ 2.47
Ccdc88bQ4QRL3 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC30.47■■■□□ 2.47
Ccdc88bQ4QRL3 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Ccdc88bQ4QRL3 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Ccdc88bQ4QRL3 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Ccdc88bQ4QRL3 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Gm15378-201ENSMUST00000121894 207 ntBASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Ccdc88bQ4QRL3 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
Ccdc88bQ4QRL3 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC30.45■■■□□ 2.47
Ccdc88bQ4QRL3 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Ccdc88bQ4QRL3 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.46
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms