Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Ddb1Q3U1J4 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ddb1Q3U1J4 Gm45560-201ENSMUST00000211492 1472 ntBASIC23.82■■□□□ 1.4
Ddb1Q3U1J4 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC23.82■■□□□ 1.4
Ddb1Q3U1J4 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC23.82■■□□□ 1.4
Ddb1Q3U1J4 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC23.82■■□□□ 1.4
Ddb1Q3U1J4 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ddb1Q3U1J4 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC23.82■■□□□ 1.4
Ddb1Q3U1J4 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Ddb1Q3U1J4 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ddb1Q3U1J4 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC23.81■■□□□ 1.4
Ddb1Q3U1J4 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ddb1Q3U1J4 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ddb1Q3U1J4 Gm5540-201ENSMUST00000131852 1848 ntBASIC23.81■■□□□ 1.4
Ddb1Q3U1J4 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ddb1Q3U1J4 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Gm37292-201ENSMUST00000192062 758 ntBASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Gm10517-202ENSMUST00000192970 758 ntBASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ddb1Q3U1J4 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC23.79■■□□□ 1.4
Ddb1Q3U1J4 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Ddb1Q3U1J4 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ddb1Q3U1J4 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ddb1Q3U1J4 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ddb1Q3U1J4 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC23.78■■□□□ 1.4
Ddb1Q3U1J4 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
Ddb1Q3U1J4 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ddb1Q3U1J4 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ddb1Q3U1J4 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC23.78■■□□□ 1.4
Ddb1Q3U1J4 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ddb1Q3U1J4 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
Ddb1Q3U1J4 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Ddb1Q3U1J4 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC23.78■■□□□ 1.4
Ddb1Q3U1J4 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ddb1Q3U1J4 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ddb1Q3U1J4 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ddb1Q3U1J4 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Ddb1Q3U1J4 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Ddb1Q3U1J4 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC23.76■■□□□ 1.39
Ddb1Q3U1J4 Gm23634-201ENSMUST00000175071 91 ntBASIC23.76■■□□□ 1.39
Ddb1Q3U1J4 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ddb1Q3U1J4 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Ddb1Q3U1J4 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Ddb1Q3U1J4 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Ddb1Q3U1J4 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ddb1Q3U1J4 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Ddb1Q3U1J4 AC159205.6-201ENSMUST00000224935 887 ntBASIC23.75■■□□□ 1.39
Ddb1Q3U1J4 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ddb1Q3U1J4 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ddb1Q3U1J4 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ddb1Q3U1J4 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ddb1Q3U1J4 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
Ddb1Q3U1J4 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ddb1Q3U1J4 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ddb1Q3U1J4 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC23.74■■□□□ 1.39
Ddb1Q3U1J4 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ddb1Q3U1J4 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ddb1Q3U1J4 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
Ddb1Q3U1J4 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms