Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
Shmt1P50431 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Shmt1P50431 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Shmt1P50431 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Shmt1P50431 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Shmt1P50431 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Shmt1P50431 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Shmt1P50431 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Shmt1P50431 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.72■□□□□ 0.75
Shmt1P50431 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Shmt1P50431 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Shmt1P50431 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.71■□□□□ 0.75
Shmt1P50431 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.71■□□□□ 0.75
Shmt1P50431 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Shmt1P50431 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Shmt1P50431 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Shmt1P50431 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Shmt1P50431 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Shmt1P50431 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Shmt1P50431 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Shmt1P50431 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.71■□□□□ 0.75
Shmt1P50431 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Shmt1P50431 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Shmt1P50431 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Shmt1P50431 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shmt1P50431 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shmt1P50431 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shmt1P50431 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shmt1P50431 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Shmt1P50431 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shmt1P50431 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shmt1P50431 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shmt1P50431 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC19.7■□□□□ 0.74
Shmt1P50431 Gm12441-201ENSMUST00000121806 588 ntBASIC19.7■□□□□ 0.74
Shmt1P50431 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.7■□□□□ 0.74
Shmt1P50431 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.7■□□□□ 0.74
Shmt1P50431 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Shmt1P50431 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shmt1P50431 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Shmt1P50431 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Shmt1P50431 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Shmt1P50431 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Shmt1P50431 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Shmt1P50431 Gm26524-201ENSMUST00000192339 390 ntBASIC19.69■□□□□ 0.74
Shmt1P50431 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.69■□□□□ 0.74
Shmt1P50431 Gm5408-201ENSMUST00000197998 747 ntBASIC19.69■□□□□ 0.74
Shmt1P50431 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.69■□□□□ 0.74
Shmt1P50431 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shmt1P50431 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shmt1P50431 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shmt1P50431 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shmt1P50431 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shmt1P50431 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shmt1P50431 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shmt1P50431 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Shmt1P50431 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Shmt1P50431 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shmt1P50431 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shmt1P50431 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shmt1P50431 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shmt1P50431 BC021767-201ENSMUST00000126387 1716 ntBASIC19.68■□□□□ 0.74
Shmt1P50431 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shmt1P50431 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shmt1P50431 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Shmt1P50431 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.67■□□□□ 0.74
Shmt1P50431 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shmt1P50431 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Shmt1P50431 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shmt1P50431 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shmt1P50431 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shmt1P50431 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shmt1P50431 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shmt1P50431 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.67■□□□□ 0.74
Shmt1P50431 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shmt1P50431 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shmt1P50431 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shmt1P50431 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.66■□□□□ 0.74
Shmt1P50431 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shmt1P50431 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Shmt1P50431 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shmt1P50431 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC19.66■□□□□ 0.74
Shmt1P50431 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
Shmt1P50431 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.66■□□□□ 0.74
Shmt1P50431 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19.66■□□□□ 0.74
Shmt1P50431 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shmt1P50431 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shmt1P50431 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC19.66■□□□□ 0.74
Shmt1P50431 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shmt1P50431 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Shmt1P50431 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shmt1P50431 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shmt1P50431 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shmt1P50431 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.66■□□□□ 0.74
Shmt1P50431 Golph3-205ENSMUST00000228671 2842 ntBASIC19.66■□□□□ 0.74
Shmt1P50431 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shmt1P50431 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shmt1P50431 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shmt1P50431 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shmt1P50431 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shmt1P50431 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms